Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_F17
(299 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04394|NUHM_BOVIN NADH-ubiquinone oxidoreductase 24 kDa ... 87 1e-17
sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase 24 kDa ... 87 1e-17
sp|Q9D6J6|NUHM_MOUSE NADH-ubiquinone oxidoreductase 24 kDa ... 87 1e-17
sp|P19234|NUHM_RAT NADH-ubiquinone oxidoreductase 24 kDa su... 86 3e-17
sp|Q20719|NUHM_CAEEL NADH-ubiquinone oxidoreductase 24 kDa ... 78 5e-15
sp|P40915|NUHM_NEUCR NADH-ubiquinone oxidoreductase 24 kDa ... 64 1e-10
sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase chain 2 (N... 53 2e-07
sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase 24 kDa ... 47 2e-05
sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase chain E (N... 44 1e-04
sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase chain E (N... 44 1e-04
>sp|P04394|NUHM_BOVIN NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor (Polypeptide II)
Length = 249
Score = 87.0 bits (214), Expect = 1e-17
Identities = 45/84 (53%), Positives = 53/84 (63%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
FT EVECLGACVNAPM+ IN I+ E ++ + PKPGP+SG RF+C
Sbjct: 169 FTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSG---RFSC 225
Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
EP G LTSL E PKGPGF V+ L
Sbjct: 226 EPAGGLTSLTEPPKGPGFGVQAGL 249
>sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 249
Score = 87.0 bits (214), Expect = 1e-17
Identities = 45/84 (53%), Positives = 53/84 (63%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
FT EVECLGACVNAPM+ IN I+ E ++ + PKPGP+SG RF+C
Sbjct: 169 FTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSG---RFSC 225
Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
EP G LTSL E PKGPGF V+ L
Sbjct: 226 EPAGGLTSLTEPPKGPGFGVQAGL 249
>sp|Q9D6J6|NUHM_MOUSE NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 248
Score = 87.0 bits (214), Expect = 1e-17
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
FT EVECLGACVNAPM+ IN I+ E ++ + PKPGP+SG RF C
Sbjct: 168 FTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKVPKPGPRSG---RFCC 224
Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
EP G LTSL E PKGPGF V+ L
Sbjct: 225 EPAGGLTSLTEPPKGPGFGVQAGL 248
>sp|P19234|NUHM_RAT NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 241
Score = 85.9 bits (211), Expect = 3e-17
Identities = 44/80 (55%), Positives = 50/80 (62%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
FT EVECLGACVNAPM+ IN I+ E ++ + PKPGP+SG RF C
Sbjct: 161 FTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGKVPKPGPRSG---RFCC 217
Query: 189 EPKGKLTSLAEEPKGPGFKV 248
EP G LTSL E PKGPGF V
Sbjct: 218 EPAGGLTSLTEPPKGPGFGV 237
>sp|Q20719|NUHM_CAEEL NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 239
Score = 78.2 bits (191), Expect = 5e-15
Identities = 42/84 (50%), Positives = 51/84 (60%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
FT +EVECLGACVNAPM+ IN IL + ++ RKP GP+SG R A
Sbjct: 158 FTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAAGPRSG---RLAA 214
Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
EP G+LTSL E P GPGF ++ L
Sbjct: 215 EPFGELTSLKETPPGPGFGLQAAL 238
>sp|P40915|NUHM_NEUCR NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 263
Score = 63.5 bits (153), Expect = 1e-10
Identities = 39/81 (48%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRI---LKEFQSD--RKPKPGPQSGQG 173
FTF EVECLGAC NAPM+ IN ++ LKE +D + P+PGPQSG
Sbjct: 179 FTFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGPQSG-- 236
Query: 174 KRFACEPKGKLTSLAEEPKGP 236
R CE LTSL EP GP
Sbjct: 237 -RQTCENAAGLTSLTSEPYGP 256
>sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase chain 2 (NADH dehydrogenase I, chain 2)
(NDH-1, chain 2)
Length = 239
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +3
Query: 6 KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFA 185
+F++ EVECLGAC NAPM I ++ F + P PGPQ+G RF+
Sbjct: 129 RFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNG---RFS 185
Query: 186 CEPKGKLTSLAE 221
E G T+LA+
Sbjct: 186 AEALGGPTALAD 197
>sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor
Length = 255
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Frame = +3
Query: 9 FTFSEVECLGACVNAPMMAI----------NXXXXXXXXXXXXIRILKEFQSDRKPKPGP 158
F+ E+EC+G CVNAPM+ + + I+++ + KP G
Sbjct: 164 FSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGT 223
Query: 159 QSGQGKRFACEPKGKLTSLAEEPKGPGFK 245
Q+ KR C P+G +L EPK P F+
Sbjct: 224 QN--PKRIKCGPEGGNKTLLGEPKPPQFR 250
>sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
(NDH-1, chain E)
Length = 167
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 6 KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSD 137
KFT SE+ECLGACVNAP++ IN +I+ + Q+D
Sbjct: 124 KFTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKLQND 167
>sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
(NDH-1, chain E)
Length = 177
Score = 43.5 bits (101), Expect = 1e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 6 KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPK 149
KFT SE+ECLGACVNAP++ IN ++++++ ++ K K
Sbjct: 126 KFTLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQYLNEFKSK 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,959,932
Number of Sequences: 369166
Number of extensions: 426416
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)