Planaria EST Database


DrC_02639

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02639
         (439 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O67802|DLHH_AQUAE  Putative carboxymethylenebutenolidase ...    29   5.1  
sp|Q07310|NRX3A_RAT  Neurexin-3-alpha precursor (Neurexin II...    28   6.6  
sp|Q9Y4C0|NRX3A_HUMAN  Neurexin-3-alpha precursor (Neurexin ...    28   6.6  
sp|P18940|NU5M_CHICK  NADH-ubiquinone oxidoreductase chain 5...    28   8.6  
sp|P52339|DNBI_HHV7J  Major DNA-binding protein (MDBP)             28   8.6  
>sp|O67802|DLHH_AQUAE Putative carboxymethylenebutenolidase (Dienelactone hydrolase)
           (DLH)
          Length = 231

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 63  ADKQENVNNDILNEEVKGIWTRCSDGQVRLCSG 161
           A+K E VNND + +  K +W    D QV++ SG
Sbjct: 164 AEKDEFVNNDEVIDIAKTVWKNGVDVQVKVFSG 196
>sp|Q07310|NRX3A_RAT Neurexin-3-alpha precursor (Neurexin III-alpha)
          Length = 1578

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
 Frame = +3

Query: 69  KQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLC------------YTCAYTFWSYWGRT 212
           + +N+      +   G+ + CS    + C    C            + C  T   YWGRT
Sbjct: 623 RSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRT 682

Query: 213 CE 218
           CE
Sbjct: 683 CE 684
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3-alpha precursor (Neurexin III-alpha)
          Length = 1541

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
 Frame = +3

Query: 69  KQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLC------------YTCAYTFWSYWGRT 212
           + +N+      +   G+ + CS    + C    C            + C  T   YWGRT
Sbjct: 619 RSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRT 678

Query: 213 CE 218
           CE
Sbjct: 679 CE 680
>sp|P18940|NU5M_CHICK NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 605

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 115 PFTSSFKISLLTFSCLSALATILASS 38
           PF SS K +L T  CL AL+T+ A++
Sbjct: 265 PFLSSNKTALTTCLCLGALSTLFAAT 290
>sp|P52339|DNBI_HHV7J Major DNA-binding protein (MDBP)
          Length = 1131

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 21  CKTLESEEAKIVAKADKQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLCYTCAYT 188
           C T     + I+   ++    N +  N E+      CS      C G  C++C  T
Sbjct: 423 CATCPQILSHIIWNLNRMSIYNTNCGNSEIYNHIVNCSSNLCEFCEGKCCHSCIGT 478
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,632,148
Number of Sequences: 369166
Number of extensions: 579857
Number of successful extensions: 1750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)