Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E09
(439 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67802|DLHH_AQUAE Putative carboxymethylenebutenolidase ... 29 5.1
sp|Q07310|NRX3A_RAT Neurexin-3-alpha precursor (Neurexin II... 28 6.6
sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3-alpha precursor (Neurexin ... 28 6.6
sp|P18940|NU5M_CHICK NADH-ubiquinone oxidoreductase chain 5... 28 8.6
sp|P52339|DNBI_HHV7J Major DNA-binding protein (MDBP) 28 8.6
>sp|O67802|DLHH_AQUAE Putative carboxymethylenebutenolidase (Dienelactone hydrolase)
(DLH)
Length = 231
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 63 ADKQENVNNDILNEEVKGIWTRCSDGQVRLCSG 161
A+K E VNND + + K +W D QV++ SG
Sbjct: 164 AEKDEFVNNDEVIDIAKTVWKNGVDVQVKVFSG 196
>sp|Q07310|NRX3A_RAT Neurexin-3-alpha precursor (Neurexin III-alpha)
Length = 1578
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Frame = +3
Query: 69 KQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLC------------YTCAYTFWSYWGRT 212
+ +N+ + G+ + CS + C C + C T YWGRT
Sbjct: 623 RSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRT 682
Query: 213 CE 218
CE
Sbjct: 683 CE 684
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3-alpha precursor (Neurexin III-alpha)
Length = 1541
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Frame = +3
Query: 69 KQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLC------------YTCAYTFWSYWGRT 212
+ +N+ + G+ + CS + C C + C T YWGRT
Sbjct: 619 RSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRT 678
Query: 213 CE 218
CE
Sbjct: 679 CE 680
>sp|P18940|NU5M_CHICK NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 605
Score = 28.1 bits (61), Expect = 8.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 115 PFTSSFKISLLTFSCLSALATILASS 38
PF SS K +L T CL AL+T+ A++
Sbjct: 265 PFLSSNKTALTTCLCLGALSTLFAAT 290
>sp|P52339|DNBI_HHV7J Major DNA-binding protein (MDBP)
Length = 1131
Score = 28.1 bits (61), Expect = 8.6
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = +3
Query: 21 CKTLESEEAKIVAKADKQENVNNDILNEEVKGIWTRCSDGQVRLCSGSLCYTCAYT 188
C T + I+ ++ N + N E+ CS C G C++C T
Sbjct: 423 CATCPQILSHIIWNLNRMSIYNTNCGNSEIYNHIVNCSSNLCEFCEGKCCHSCIGT 478
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,632,148
Number of Sequences: 369166
Number of extensions: 579857
Number of successful extensions: 1750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)