Planaria EST Database


DrC_02638

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02638
         (503 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44947|DEGS_HAEIN  Protease degS precursor                      34   0.17 
sp|O59751|KLP6_SCHPO  Kinesin-like protein 6                       31   1.9  
sp|P26982|DEGP_SALTY  Protease do precursor                        30   3.3  
sp|Q9Z6T0|DEGP_CHLPN  Probable serine protease do-like precu...    30   3.3  
sp|O84904|GALT_LACCA  Galactose-1-phosphate uridylyltransfer...    30   3.3  
sp|P31822|POL_FIVT2  Pol polyprotein [Contains: Protease (Re...    30   4.3  
sp|P09376|DEGP_ECOLI  Protease do precursor                        30   4.3  
sp|Q6BMV3|HUT1_DEBHA  UDP-galactose transporter homolog 1          30   4.3  
sp|Q8TDM6|DLG5_HUMAN  Discs large homolog 5 (Placenta and pr...    30   4.3  
sp|P00469|TYSY_LACCA  Thymidylate synthase (TS) (TSase)            29   5.6  
>sp|P44947|DEGS_HAEIN Protease degS precursor
          Length = 340

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 45  VITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYK 188
           VIT+V+P+S   K  I VGDV+L        S   + Q+ AN   N K
Sbjct: 269 VITDVSPNSPAAKSGIQVGDVILKLNNQEGISAREMMQIIANTKPNSK 316
>sp|O59751|KLP6_SCHPO Kinesin-like protein 6
          Length = 784

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 18  SKLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYKTNQ 197
           +KL      +  +VNP  +C     S+  ++ SF G   D Y  + Q   +  ++   NQ
Sbjct: 512 AKLYDQRSLITAKVNPEEICKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIENQ 571

Query: 198 FIELK 212
            ++ K
Sbjct: 572 ILDAK 576
>sp|P26982|DEGP_SALTY Protease do precursor
          Length = 475

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 21  KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLK 155
           K++    A +++V P+S   K  I  GDV+ S  G  I S+  L+
Sbjct: 308 KVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKPISSFAALR 352
>sp|Q9Z6T0|DEGP_CHLPN Probable serine protease do-like precursor
          Length = 488

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 21  KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDS 140
           KL K Y A++T+V   S   K  +   DV++++ G  +DS
Sbjct: 309 KLEKVYGALVTDVVKGSPADKAGLKQEDVIIAYNGKEVDS 348
>sp|O84904|GALT_LACCA Galactose-1-phosphate uridylyltransferase (Gal-1-P
           uridylyltransferase) (UDP-glucose--hexose-1-phosphate
           uridylyltransferase)
          Length = 486

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 343 LLSILLRGMTLGFQSTIILQTSEHGIFKQA*YKPSISNASRF 218
           ++  LL G T GFQ +     +EH IF  A ++P + + S F
Sbjct: 191 IIRFLLGGKTWGFQYSPYAYFNEHAIFLDAIHEPMVIDQSTF 232
>sp|P31822|POL_FIVT2 Pol polyprotein [Contains: Protease (Retropepsin); Reverse
           transcriptase/ribonuclease H (RT); Deoxyuridine
           5'-triphosphate nucleotidohydrolase (dUTPase); Integrase
           (IN)]
          Length = 1124

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 27  NKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYKTNQFIE 206
           N+  YA ++ V PH +C++      + +L +G IN    +            YK  +   
Sbjct: 476 NRGLYAKLSLVGPHQICYQVYQKNPEHILWYGKINRQKKKAENTCDIALRACYKIREESI 535

Query: 207 LKIKKREAFEI 239
           ++I K   +EI
Sbjct: 536 IRIGKEPVYEI 546
>sp|P09376|DEGP_ECOLI Protease do precursor
          Length = 474

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 21  KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLK 155
           K++    A +++V P+S   K  I  GDV+ S  G  I S+  L+
Sbjct: 307 KVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALR 351
>sp|Q6BMV3|HUT1_DEBHA UDP-galactose transporter homolog 1
          Length = 354

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   IIFVTSKLNKSYYAVITEVNPHSVCHKEN-ISVGDVLLSFGGINIDSYETLKQLSANKSE 179
           +I +TS + +   ++I  V      H+ N +  G V L FGGI    YE L ++S NK+ 
Sbjct: 294 LILITSTVTRKMISMILSVVLFG--HQLNGLQWGGVGLVFGGIG---YEALVKMSMNKAP 348

Query: 180 NYKTNQ 197
             K NQ
Sbjct: 349 TTKKNQ 354
>sp|Q8TDM6|DLG5_HUMAN Discs large homolog 5 (Placenta and prostate DLG) (Discs large
            protein P-dlg)
          Length = 1809

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 48   ITEVNPHSVCHKENISVGDVLLSFGGINIDS 140
            +++V   S+ H+  +  GD LL F GIN+ S
Sbjct: 1264 VSKVTVGSIAHQAGLEYGDQLLEFNGINLRS 1294
>sp|P00469|TYSY_LACCA Thymidylate synthase (TS) (TSase)
          Length = 316

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +3

Query: 6   IFVTSKLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENY 185
           IF+    N + YA++T    H V H+  + VG+ + +FG  ++     L Q+    S   
Sbjct: 222 IFLGVPFNIASYALLT----HLVAHECGLEVGEFIHTFGDAHL-YVNHLDQIKEQLSRTP 276

Query: 186 KTNQFIELKIKKREAFEID 242
           +    ++L   K + F+ D
Sbjct: 277 RPAPTLQLNPDKHDIFDFD 295
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,311,461
Number of Sequences: 369166
Number of extensions: 1042040
Number of successful extensions: 3414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3411
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)