Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E07
(503 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P44947|DEGS_HAEIN Protease degS precursor 34 0.17
sp|O59751|KLP6_SCHPO Kinesin-like protein 6 31 1.9
sp|P26982|DEGP_SALTY Protease do precursor 30 3.3
sp|Q9Z6T0|DEGP_CHLPN Probable serine protease do-like precu... 30 3.3
sp|O84904|GALT_LACCA Galactose-1-phosphate uridylyltransfer... 30 3.3
sp|P31822|POL_FIVT2 Pol polyprotein [Contains: Protease (Re... 30 4.3
sp|P09376|DEGP_ECOLI Protease do precursor 30 4.3
sp|Q6BMV3|HUT1_DEBHA UDP-galactose transporter homolog 1 30 4.3
sp|Q8TDM6|DLG5_HUMAN Discs large homolog 5 (Placenta and pr... 30 4.3
sp|P00469|TYSY_LACCA Thymidylate synthase (TS) (TSase) 29 5.6
>sp|P44947|DEGS_HAEIN Protease degS precursor
Length = 340
Score = 34.3 bits (77), Expect = 0.17
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 45 VITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYK 188
VIT+V+P+S K I VGDV+L S + Q+ AN N K
Sbjct: 269 VITDVSPNSPAAKSGIQVGDVILKLNNQEGISAREMMQIIANTKPNSK 316
>sp|O59751|KLP6_SCHPO Kinesin-like protein 6
Length = 784
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 18 SKLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYKTNQ 197
+KL + +VNP +C S+ ++ SF G D Y + Q + ++ NQ
Sbjct: 512 AKLYDQRSLITAKVNPEEICKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIENQ 571
Query: 198 FIELK 212
++ K
Sbjct: 572 ILDAK 576
>sp|P26982|DEGP_SALTY Protease do precursor
Length = 475
Score = 30.0 bits (66), Expect = 3.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 21 KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLK 155
K++ A +++V P+S K I GDV+ S G I S+ L+
Sbjct: 308 KVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKPISSFAALR 352
>sp|Q9Z6T0|DEGP_CHLPN Probable serine protease do-like precursor
Length = 488
Score = 30.0 bits (66), Expect = 3.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 21 KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDS 140
KL K Y A++T+V S K + DV++++ G +DS
Sbjct: 309 KLEKVYGALVTDVVKGSPADKAGLKQEDVIIAYNGKEVDS 348
>sp|O84904|GALT_LACCA Galactose-1-phosphate uridylyltransferase (Gal-1-P
uridylyltransferase) (UDP-glucose--hexose-1-phosphate
uridylyltransferase)
Length = 486
Score = 30.0 bits (66), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 343 LLSILLRGMTLGFQSTIILQTSEHGIFKQA*YKPSISNASRF 218
++ LL G T GFQ + +EH IF A ++P + + S F
Sbjct: 191 IIRFLLGGKTWGFQYSPYAYFNEHAIFLDAIHEPMVIDQSTF 232
>sp|P31822|POL_FIVT2 Pol polyprotein [Contains: Protease (Retropepsin); Reverse
transcriptase/ribonuclease H (RT); Deoxyuridine
5'-triphosphate nucleotidohydrolase (dUTPase); Integrase
(IN)]
Length = 1124
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 27 NKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENYKTNQFIE 206
N+ YA ++ V PH +C++ + +L +G IN + YK +
Sbjct: 476 NRGLYAKLSLVGPHQICYQVYQKNPEHILWYGKINRQKKKAENTCDIALRACYKIREESI 535
Query: 207 LKIKKREAFEI 239
++I K +EI
Sbjct: 536 IRIGKEPVYEI 546
>sp|P09376|DEGP_ECOLI Protease do precursor
Length = 474
Score = 29.6 bits (65), Expect = 4.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 21 KLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLK 155
K++ A +++V P+S K I GDV+ S G I S+ L+
Sbjct: 307 KVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALR 351
>sp|Q6BMV3|HUT1_DEBHA UDP-galactose transporter homolog 1
Length = 354
Score = 29.6 bits (65), Expect = 4.3
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 IIFVTSKLNKSYYAVITEVNPHSVCHKEN-ISVGDVLLSFGGINIDSYETLKQLSANKSE 179
+I +TS + + ++I V H+ N + G V L FGGI YE L ++S NK+
Sbjct: 294 LILITSTVTRKMISMILSVVLFG--HQLNGLQWGGVGLVFGGIG---YEALVKMSMNKAP 348
Query: 180 NYKTNQ 197
K NQ
Sbjct: 349 TTKKNQ 354
>sp|Q8TDM6|DLG5_HUMAN Discs large homolog 5 (Placenta and prostate DLG) (Discs large
protein P-dlg)
Length = 1809
Score = 29.6 bits (65), Expect = 4.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 48 ITEVNPHSVCHKENISVGDVLLSFGGINIDS 140
+++V S+ H+ + GD LL F GIN+ S
Sbjct: 1264 VSKVTVGSIAHQAGLEYGDQLLEFNGINLRS 1294
>sp|P00469|TYSY_LACCA Thymidylate synthase (TS) (TSase)
Length = 316
Score = 29.3 bits (64), Expect = 5.6
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +3
Query: 6 IFVTSKLNKSYYAVITEVNPHSVCHKENISVGDVLLSFGGINIDSYETLKQLSANKSENY 185
IF+ N + YA++T H V H+ + VG+ + +FG ++ L Q+ S
Sbjct: 222 IFLGVPFNIASYALLT----HLVAHECGLEVGEFIHTFGDAHL-YVNHLDQIKEQLSRTP 276
Query: 186 KTNQFIELKIKKREAFEID 242
+ ++L K + F+ D
Sbjct: 277 RPAPTLQLNPDKHDIFDFD 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,311,461
Number of Sequences: 369166
Number of extensions: 1042040
Number of successful extensions: 3414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3411
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)