Planaria EST Database


DrC_02633

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02633
         (327 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35072|TCB1_CAEBR  Transposable element Tcb1 transposase ...    47   1e-05
sp|P03934|TC1A_CAEEL  Transposable element Tc1 transposase         47   1e-05
sp|Q04202|TCB2_CAEBR  Transposable element Tcb2 transposase        42   3e-04
sp|P34257|TC3A_CAEEL  Transposable element Tc3 transposase         33   0.20 
sp|Q58793|Y1398_METJA  Putative HTH-type transcriptional reg...    28   8.4  
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
           transposase)
          Length = 273

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +3

Query: 153 KFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
           KF  L   WK++    +  L+ESMPRRC+AVID  G PTKY
Sbjct: 233 KFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY 273

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 91  LDWLSQSPDLNLIENLW 41
           L+W SQSPDLN IE++W
Sbjct: 199 LEWPSQSPDLNPIEHMW 215
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
          Length = 273

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +3

Query: 150 SKFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
           +KF  L   WK +    +  L++SMPRRCQAVID NG  TKY
Sbjct: 232 AKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 273

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 91  LDWLSQSPDLNLIENLW 41
           LDW SQSPDLN IE+LW
Sbjct: 199 LDWPSQSPDLNPIEHLW 215
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
          Length = 273

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +3

Query: 153 KFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
           KF  L   W+ +    +  +++SMPRRCQ VID  G PTKY
Sbjct: 233 KFDQLQDVWQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY 273

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 91  LDWLSQSPDLNLIENLW 41
           LDW SQSPDLN IE+LW
Sbjct: 199 LDWPSQSPDLNPIEHLW 215
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
          Length = 329

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -3

Query: 91  LDWLSQSPDLNLIENLW 41
           LDW ++SPDLN IENLW
Sbjct: 253 LDWPARSPDLNPIENLW 269
>sp|Q58793|Y1398_METJA Putative HTH-type transcriptional regulator MJ1398
          Length = 391

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 58  DLNLDFEIASLNLNLIENLWIFLEKQVTNR 147
           DLNL+ E    NL  +ENL I   K+  NR
Sbjct: 348 DLNLNVETVRYNLKKLENLGIVKSKEEGNR 377
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,010,565
Number of Sequences: 369166
Number of extensions: 699859
Number of successful extensions: 1536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)