Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C21
(327 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase ... 47 1e-05
sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase 47 1e-05
sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase 42 3e-04
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 33 0.20
sp|Q58793|Y1398_METJA Putative HTH-type transcriptional reg... 28 8.4
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
transposase)
Length = 273
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +3
Query: 153 KFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
KF L WK++ + L+ESMPRRC+AVID G PTKY
Sbjct: 233 KFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY 273
Score = 31.6 bits (70), Expect = 0.58
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -3
Query: 91 LDWLSQSPDLNLIENLW 41
L+W SQSPDLN IE++W
Sbjct: 199 LEWPSQSPDLNPIEHMW 215
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
Length = 273
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +3
Query: 150 SKFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
+KF L WK + + L++SMPRRCQAVID NG TKY
Sbjct: 232 AKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 273
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -3
Query: 91 LDWLSQSPDLNLIENLW 41
LDW SQSPDLN IE+LW
Sbjct: 199 LDWPSQSPDLNPIEHLW 215
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
Length = 273
Score = 42.4 bits (98), Expect = 3e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 153 KFQLLCVGWKNLKPDFLINLVESMPRRCQAVIDNNGLPTKY 275
KF L W+ + + +++SMPRRCQ VID G PTKY
Sbjct: 233 KFDQLQDVWQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY 273
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -3
Query: 91 LDWLSQSPDLNLIENLW 41
LDW SQSPDLN IE+LW
Sbjct: 199 LDWPSQSPDLNPIEHLW 215
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 33.1 bits (74), Expect = 0.20
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3
Query: 91 LDWLSQSPDLNLIENLW 41
LDW ++SPDLN IENLW
Sbjct: 253 LDWPARSPDLNPIENLW 269
>sp|Q58793|Y1398_METJA Putative HTH-type transcriptional regulator MJ1398
Length = 391
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 58 DLNLDFEIASLNLNLIENLWIFLEKQVTNR 147
DLNL+ E NL +ENL I K+ NR
Sbjct: 348 DLNLNVETVRYNLKKLENLGIVKSKEEGNR 377
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,010,565
Number of Sequences: 369166
Number of extensions: 699859
Number of successful extensions: 1536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)