Planaria EST Database


DrC_02630

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02630
         (307 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TNS2|U327_MOUSE  Hypothetical UPF0327 protein                 50   2e-06
sp|Q9N4K0|U327_CAEEL  Hypothetical UPF0327 protein F54A3.5         47   1e-05
sp|Q7RYI0|U327_NEUCR  Hypothetical UPF0327 protein NCU06495.1      35   0.041
sp|Q13469|NFAC2_HUMAN  Nuclear factor of activated T-cells, ...    28   6.6  
sp|Q7TUA3|FMT_PROMP  Methionyl-tRNA formyltransferase              28   8.6  
>sp|Q7TNS2|U327_MOUSE Hypothetical UPF0327 protein
          Length = 76

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = +1

Query: 7   IGIKIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFKTP 186
           +G K DRC++D +VK            +  FKR+   L F + VGLGMA +NC +DF+ P
Sbjct: 6   LGRKWDRCMADTVVKLGTGFGLGIVFSLTFFKRRMWPLAFGSGVGLGMAYSNCQHDFQAP 65
>sp|Q9N4K0|U327_CAEEL Hypothetical UPF0327 protein F54A3.5
          Length = 105

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 1   DAIGIKIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFK 180
           D +G KIDRC +D+L+K            V  FK +   + F + VGLG   +NC +DF 
Sbjct: 15  DEVGQKIDRCFADSLLKVTGGVAIGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCRHDFA 74

Query: 181 TP 186
           +P
Sbjct: 75  SP 76
>sp|Q7RYI0|U327_NEUCR Hypothetical UPF0327 protein NCU06495.1
          Length = 93

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +1

Query: 16  KIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFK 180
           K DRCLS+ L+K+           VL+FKR+          G G A   CN   K
Sbjct: 29  KWDRCLSNLLIKSTLGLGFGVVFSVLIFKRRAWPAFVGVGFGAGRAYEECNTSLK 83
>sp|Q13469|NFAC2_HUMAN Nuclear factor of activated T-cells, cytoplasmic 2 (T cell
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 925

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -3

Query: 164 QFAIAIPKPTLVVKIRNPGFLLKSKTDPIMP------MPAPLAVFTSASDKHRSILI 12
           QF   +  P    + +NP  +L  ++  + P       PA +A   S +D HRS+L+
Sbjct: 730 QFRTGLSSPDARYQQQNPAAVLYQRSKSLSPSLLGYQQPALMAAPLSLADAHRSVLV 786
>sp|Q7TUA3|FMT_PROMP Methionyl-tRNA formyltransferase
          Length = 328

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 143 KPTLVVK-IRNPGFLLKSKTDPIMPMPAPL 57
           KP L++  I+N G ++ +KTDPI+ + A L
Sbjct: 274 KPGLIIGLIKNVGIIITTKTDPILLLEAKL 303
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,017,479
Number of Sequences: 369166
Number of extensions: 580960
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)