Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C18
(307 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TNS2|U327_MOUSE Hypothetical UPF0327 protein 50 2e-06
sp|Q9N4K0|U327_CAEEL Hypothetical UPF0327 protein F54A3.5 47 1e-05
sp|Q7RYI0|U327_NEUCR Hypothetical UPF0327 protein NCU06495.1 35 0.041
sp|Q13469|NFAC2_HUMAN Nuclear factor of activated T-cells, ... 28 6.6
sp|Q7TUA3|FMT_PROMP Methionyl-tRNA formyltransferase 28 8.6
>sp|Q7TNS2|U327_MOUSE Hypothetical UPF0327 protein
Length = 76
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +1
Query: 7 IGIKIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFKTP 186
+G K DRC++D +VK + FKR+ L F + VGLGMA +NC +DF+ P
Sbjct: 6 LGRKWDRCMADTVVKLGTGFGLGIVFSLTFFKRRMWPLAFGSGVGLGMAYSNCQHDFQAP 65
>sp|Q9N4K0|U327_CAEEL Hypothetical UPF0327 protein F54A3.5
Length = 105
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 1 DAIGIKIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFK 180
D +G KIDRC +D+L+K V FK + + F + VGLG +NC +DF
Sbjct: 15 DEVGQKIDRCFADSLLKVTGGVAIGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCRHDFA 74
Query: 181 TP 186
+P
Sbjct: 75 SP 76
>sp|Q7RYI0|U327_NEUCR Hypothetical UPF0327 protein NCU06495.1
Length = 93
Score = 35.4 bits (80), Expect = 0.041
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 16 KIDRCLSDALVKTXXXXXXXXXXXVLLFKRKPGFLIFTTSVGLGMAIANCNNDFK 180
K DRCLS+ L+K+ VL+FKR+ G G A CN K
Sbjct: 29 KWDRCLSNLLIKSTLGLGFGVVFSVLIFKRRAWPAFVGVGFGAGRAYEECNTSLK 83
>sp|Q13469|NFAC2_HUMAN Nuclear factor of activated T-cells, cytoplasmic 2 (T cell
transcription factor NFAT1) (NFAT pre-existing subunit)
(NF-ATp)
Length = 925
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 164 QFAIAIPKPTLVVKIRNPGFLLKSKTDPIMP------MPAPLAVFTSASDKHRSILI 12
QF + P + +NP +L ++ + P PA +A S +D HRS+L+
Sbjct: 730 QFRTGLSSPDARYQQQNPAAVLYQRSKSLSPSLLGYQQPALMAAPLSLADAHRSVLV 786
>sp|Q7TUA3|FMT_PROMP Methionyl-tRNA formyltransferase
Length = 328
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 143 KPTLVVK-IRNPGFLLKSKTDPIMPMPAPL 57
KP L++ I+N G ++ +KTDPI+ + A L
Sbjct: 274 KPGLIIGLIKNVGIIITTKTDPILLLEAKL 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,017,479
Number of Sequences: 369166
Number of extensions: 580960
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)