Planaria EST Database


DrC_02628

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02628
         (465 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90512|ODO2_FUGRU  Dihydrolipoyllysine-residue succinyltr...    91   1e-18
sp|P36957|ODO2_HUMAN  Dihydrolipoyllysine-residue succinyltr...    83   3e-16
sp|Q9N0F1|ODO2_PIG  Dihydrolipoyllysine-residue succinyltran...    82   6e-16
sp|Q01205|ODO2_RAT  Dihydrolipoyllysine-residue succinyltran...    79   4e-15
sp|Q9D2G2|ODO2_MOUSE  Dihydrolipoyllysine-residue succinyltr...    78   9e-15
sp|O94681|ODO2_SCHPO  Probable dihydrolipoyllysine-residue s...    69   4e-12
sp|P52993|ODO2_RALEU  Dihydrolipoyllysine-residue succinyltr...    65   7e-11
sp|P19262|ODO2_YEAST  Dihydrolipoyllysine-residue succinyltr...    62   6e-10
sp|P20708|ODO2_AZOVI  Dihydrolipoyllysine-residue succinyltr...    61   1e-09
sp|P11961|ODP2_BACST  Dihydrolipoyllysine-residue acetyltran...    60   2e-09
>sp|Q90512|ODO2_FUGRU Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex) (E2)
           (E2K)
          Length = 409

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 51/101 (50%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
 Frame = +3

Query: 132 REIGTSLFLFEDKI-IKTPPFAESVTEGDVRWSKKPGDTVVVDEVLGEIETDKTAIPIHS 308
           R   TS+   +D + +KTP FAESVTEGDVRW K  GD+V  DEV+ EIETDKT++ + S
Sbjct: 27  RYFRTSVVHRDDLVTVKTPAFAESVTEGDVRWEKAVGDSVTEDEVVCEIETDKTSVQVPS 86

Query: 309 PFQGTILELIVSDGDKVIANQDLVKISLGAVTETKKDVVIE 431
           P  G I EL+V DG KV     L K+  GA  E     V E
Sbjct: 87  PAAGVIEELLVPDGGKVEGGTPLFKLRKGAAAEAAPSSVTE 127
>sp|P36957|ODO2_HUMAN Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex) (E2)
           (E2K)
          Length = 453

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 42/83 (50%), Positives = 56/83 (67%)
 Frame = +3

Query: 111 NKIYTIKREIGTSLFLFEDKIIKTPPFAESVTEGDVRWSKKPGDTVVVDEVLGEIETDKT 290
           N +++++    T++   +   +KTP FAESVTEGDVRW K  GDTV  DEV+ EIETDKT
Sbjct: 52  NSVFSVRFFRTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKT 111

Query: 291 AIPIHSPFQGTILELIVSDGDKV 359
           ++ + SP  G I  L+V DG KV
Sbjct: 112 SVQVPSPANGVIEALLVPDGGKV 134
>sp|Q9N0F1|ODO2_PIG Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex) (E2)
           (E2K) (E2o) (PE2o)
          Length = 455

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 40/62 (64%), Positives = 46/62 (74%)
 Frame = +3

Query: 174 IKTPPFAESVTEGDVRWSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDGD 353
           +KTP FAESVTEGDVRW K  GDTV  DEV+ EIETDKT++ + SP  G I  L+V DG 
Sbjct: 74  VKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGG 133

Query: 354 KV 359
           KV
Sbjct: 134 KV 135
>sp|Q01205|ODO2_RAT Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex) (E2)
           (E2K)
          Length = 454

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 40/85 (47%), Positives = 56/85 (65%)
 Frame = +3

Query: 105 NRNKIYTIKREIGTSLFLFEDKIIKTPPFAESVTEGDVRWSKKPGDTVVVDEVLGEIETD 284
           N + +++++    T++   +   ++TP FAESVTEGDVRW K  GD V  DEV+ EIETD
Sbjct: 51  NNSSVFSVRFFQTTAVCKNDVITVQTPAFAESVTEGDVRWEKAVGDAVAEDEVVCEIETD 110

Query: 285 KTAIPIHSPFQGTILELIVSDGDKV 359
           KT++ + SP  G I  L+V DG KV
Sbjct: 111 KTSVQVPSPANGIIEALLVPDGGKV 135
>sp|Q9D2G2|ODO2_MOUSE Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex) (E2)
           (E2K)
          Length = 454

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = +3

Query: 174 IKTPPFAESVTEGDVRWSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDGD 353
           ++TP FAESVTEGDVRW K  GD V  DEV+ EIETDKT++ + SP  G I  L+V DG 
Sbjct: 74  VQTPAFAESVTEGDVRWEKAVGDAVAEDEVVCEIETDKTSVQVPSPANGIIEALLVPDGG 133

Query: 354 KV 359
           KV
Sbjct: 134 KV 135
>sp|O94681|ODO2_SCHPO Probable dihydrolipoyllysine-residue succinyltransferase component
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (E2) (Probable dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex)
          Length = 452

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = +3

Query: 174 IKTPPFAESVTEGDV-RWSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDG 350
           IKTPPF ES+TEG + +W K+PG+ V  DE +  +ETDK   P+ +P  G + E +V +G
Sbjct: 45  IKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEG 104

Query: 351 DKVIANQDLVKISLGA 398
           D +  +QD+  I   A
Sbjct: 105 DTITIDQDIAVIDTSA 120
>sp|P52993|ODO2_RALEU Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex (E2)
           (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 416

 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +3

Query: 174 IKTPPFAESVTEGDV-RWSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDG 350
           +K P  +ESV E  +  W KKPG+ V  DE+L EIETDK  + + +P  G +  ++ +DG
Sbjct: 6   VKVPQLSESVAEATMLNWKKKPGEAVAQDEILIEIETDKVVLEVPAPSAGVLSIIVKNDG 65

Query: 351 DKVIANQDLVKISLGA 398
           D V+A++ + KI   A
Sbjct: 66  DTVVADEIIAKIDTEA 81

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 228 KKPGDTVVVDEVLGEIETDKTA 293
           K  GDTVV DE++ +I+T+ TA
Sbjct: 62  KNDGDTVVADEIIAKIDTEATA 83
>sp|P19262|ODO2_YEAST Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (E2) (Dihydrolipoamide succinyltransferase
           component of 2-oxoglutarate dehydrogenase complex)
          Length = 463

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
 Frame = +3

Query: 159 FEDKIIKTPPFAESVTEGDVR-WSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILEL 335
           F+   I+ PP AES+TEG ++ ++K  GD +  DE+L  IETDK  I ++SP  GT+ +L
Sbjct: 71  FKSTSIEVPPMAESLTEGSLKEYTKNVGDFIKEDELLATIETDKIDIEVNSPVSGTVTKL 130

Query: 336 IVSDGDKVIANQDLVKISLGAVTETKKDVVIETKIEKKPE 455
                D V   ++L ++  G       +   E   E KPE
Sbjct: 131 NFKPEDTVTVGEELAQVEPG-------EAPAEGSGESKPE 163
>sp|P20708|ODO2_AZOVI Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex (E2)
           (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 399

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 174 IKTPPFAESVTEGDVR-WSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDG 350
           IK P F ES+ +G V  W KKPG+ V  DE++ +IETDK  + + +   G I E++ ++G
Sbjct: 5   IKAPTFPESIADGTVATWHKKPGEPVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 64

Query: 351 DKVIANQDLVKISLG 395
           D V++ + L K++ G
Sbjct: 65  DTVLSGELLGKLTEG 79
>sp|P11961|ODP2_BACST Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase complex (E2) (Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex)
          Length = 428

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
 Frame = +3

Query: 177 KTPPFAESVTEGD-VRWSKKPGDTVVVDEVLGEIETDKTAIPIHSPFQGTILELIVSDGD 353
           K P   E + EG+ V+W  KPGD V  D+VL E++ DK  + I SP +G +LE++V +G 
Sbjct: 6   KLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65

Query: 354 KVIANQDLVKISLGAVTET--KKDVVIETKIEKKPEVIT 464
                Q L+ +          K     E K E+K E ++
Sbjct: 66  VATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVS 104
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,088,523
Number of Sequences: 369166
Number of extensions: 745225
Number of successful extensions: 2496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2485
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)