Planaria EST Database


DrC_02619

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02619
         (321 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10021|RSP5_CAEEL  Probable splicing factor, arginine/ser...    32   0.59 
sp|P98081|DAB_DROME  Disabled protein                              30   1.7  
sp|P27816|MAP4_HUMAN  Microtubule-associated protein 4 (MAP 4)     29   2.9  
sp|Q689G6|PRR95_ORYSA  Two-component response regulator-like...    29   2.9  
sp|Q9NP84|FN14_HUMAN  Tumor necrosis factor receptor superfa...    29   3.8  
sp|Q02343|CAC1E_RABIT  Voltage-dependent R-type calcium chan...    28   5.0  
sp|O00221|IKBE_HUMAN  NF-kappaB inhibitor epsilon (NF-kappa-...    28   5.0  
sp|Q03643|MSA2_PLAFK  Merozoite surface antigen 2 precursor ...    28   5.0  
sp|Q09530|MOG5_CAEEL  Probable pre-mRNA splicing factor ATP-...    28   6.5  
sp|Q88QJ8|SELA_PSEPK  L-seryl-tRNA(Sec) selenium transferase...    28   6.5  
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
           protein srp-3) (CeSC35-2)
          Length = 208

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -3

Query: 280 ACHQRQSR-IEIIIKRRAWRMSRGPRALVNPAGGRTEGSVSERLLHRACRRVS---PRRS 113
           ACH    + +E    R    M+RG      P G    GS S R   R+ RR S   PRR 
Sbjct: 51  ACHDLDGKTMEGSSMRLVVEMARG-----KPRGNDRHGSRSPRRRSRSPRRRSRTPPRRR 105

Query: 112 CRAPDRGRP*NCLSRSAIAPRS 47
            R+ DR R     SRS+   RS
Sbjct: 106 SRSRDRKRSRRSRSRSSSRSRS 127
>sp|P98081|DAB_DROME Disabled protein
          Length = 2224

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
 Frame = -3

Query: 202  LVNPAGGRTEGSVSERLLHRACR--------RVSPRRSCRAPDRGRP 86
            L  P GG  +    + L+HRA          RVSP  S  AP RG P
Sbjct: 1311 LTAPGGGTKDDIEIDELMHRAISNLSLDSRDRVSPATSSAAPSRGAP 1357
>sp|P27816|MAP4_HUMAN Microtubule-associated protein 4 (MAP 4)
          Length = 1152

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -2

Query: 227  ANVSRPSSTCESCRREDRRFCI*ASVA*SMPSRLATPILPSARSRAPM----KLSVEVSD 60
            A++SRP ST  S  ++       A  A  +PSR+    +PS  S  P       S + S 
Sbjct: 856  ADLSRPKSTSTSSMKKTTTLSGTAPAAGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSS 915

Query: 59   RTPINKSVISSTRSP 15
             TP    + ++T +P
Sbjct: 916  TTPRLSRLATNTSAP 930
>sp|Q689G6|PRR95_ORYSA Two-component response regulator-like PRR95 (Pseudo-response
           regulator 95) (OsPRR95)
          Length = 623

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 89  APSIWRSARSAWRDAT--ACSMQQ 154
           AP IW S  S W+DAT  A S+QQ
Sbjct: 454 APPIWNSKTSTWQDATTQAISLQQ 477
>sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfamily member Fn14 precursor
           (Fibroblast growth factor-inducible immediate-early
           response protein 14) (FGF-inducible 14) (Tweak-receptor)
           (TweakR) (CD266 antigen)
          Length = 129

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
 Frame = -2

Query: 320 RNRINRILQNT*FGVPSTTIKNRNNHQEKSLANVSRPSS---------TCESCR-REDRR 171
           R  + R+L+    G+    +++    Q    A  SR SS          C SCR R    
Sbjct: 3   RGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPHSD 62

Query: 170 FCI*ASVA*SMPSRLATPILPSARS 96
           FC+  + A   P RL  PIL  A S
Sbjct: 63  FCLGCAAAPPAPFRLLWPILGGALS 87
>sp|Q02343|CAC1E_RABIT Voltage-dependent R-type calcium channel alpha-1E subunit
            (Voltage-gated calcium channel alpha subunit Cav2.3)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 6)
            (Brain calcium channel II) (BII)
          Length = 2259

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -3

Query: 205  ALVNPAGGRTEGSVSERLLHRACRRVSPRRSCRAPDRGRP*NCLSRSAIAPRSINQSYLP 26
            AL   AGG T  +  +R  HR  +R S  R  R   +       SRS    RS+++    
Sbjct: 886  ALQETAGGETVVTFEDRARHRQSQRRSRHRRVRTEAKESSSASRSRSVSQERSLDEGAST 945

Query: 25   PGPR 14
             G R
Sbjct: 946  EGER 949
>sp|O00221|IKBE_HUMAN NF-kappaB inhibitor epsilon (NF-kappa-BIE) (I-kappa-B-epsilon)
           (IkappaBepsilon) (IKB-epsilon) (IKBE)
          Length = 361

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 99  SGARQDRRGETRRHALCNRRSDTEPSVLPPAGFTSARG 212
           S A QDR G+T  H  C R+S   P+     G    RG
Sbjct: 180 SRALQDRHGDTALHVACQRQSWPVPAACWKGGPEPGRG 217
>sp|Q03643|MSA2_PLAFK Merozoite surface antigen 2 precursor (MSA-2)
          Length = 280

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 137 PSRLATPILPSARSRAPMKLSVEVSDRTPINKSVISSTRSPLVTS 3
           P+   TP    + SR+P   + E + R+P   +  S++RSP +T+
Sbjct: 89  PTAADTPTATESNSRSPPITTTESNSRSPPITTTESNSRSPPITT 133
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-5
           (Sex determination protein mog-5) (Masculinization of
           germ line protein 5)
          Length = 1200

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 66  DLDRQFHGRPRSGARQDRRGETRRHALCNRRSD 164
           D DR+   R R   R DRRG+ R+    +RR D
Sbjct: 190 DRDRRDRDRDRDRGRGDRRGDDRQRDRRDRRDD 222
>sp|Q88QJ8|SELA_PSEPK L-seryl-tRNA(Sec) selenium transferase (Cysteinyl-tRNA(Sec)
           selenium transferase) (Selenocysteine synthase)
           (Selenocysteinyl-tRNA(Sec) synthase)
          Length = 475

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 19  DLVEDMTDLLIGVRSLTSTDNFMGALDLALGKIGVARRDGML 144
           DL+E +   L G  ++T  +N   A+ LAL  +G AR++G++
Sbjct: 134 DLIEGLIRELTGAEAVTVVNNNAAAVLLALNSLG-ARKEGII 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,428,974
Number of Sequences: 369166
Number of extensions: 818838
Number of successful extensions: 2300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)