Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A18
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/ser... 32 0.59
sp|P98081|DAB_DROME Disabled protein 30 1.7
sp|P27816|MAP4_HUMAN Microtubule-associated protein 4 (MAP 4) 29 2.9
sp|Q689G6|PRR95_ORYSA Two-component response regulator-like... 29 2.9
sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfa... 29 3.8
sp|Q02343|CAC1E_RABIT Voltage-dependent R-type calcium chan... 28 5.0
sp|O00221|IKBE_HUMAN NF-kappaB inhibitor epsilon (NF-kappa-... 28 5.0
sp|Q03643|MSA2_PLAFK Merozoite surface antigen 2 precursor ... 28 5.0
sp|Q09530|MOG5_CAEEL Probable pre-mRNA splicing factor ATP-... 28 6.5
sp|Q88QJ8|SELA_PSEPK L-seryl-tRNA(Sec) selenium transferase... 28 6.5
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
protein srp-3) (CeSC35-2)
Length = 208
Score = 31.6 bits (70), Expect = 0.59
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -3
Query: 280 ACHQRQSR-IEIIIKRRAWRMSRGPRALVNPAGGRTEGSVSERLLHRACRRVS---PRRS 113
ACH + +E R M+RG P G GS S R R+ RR S PRR
Sbjct: 51 ACHDLDGKTMEGSSMRLVVEMARG-----KPRGNDRHGSRSPRRRSRSPRRRSRTPPRRR 105
Query: 112 CRAPDRGRP*NCLSRSAIAPRS 47
R+ DR R SRS+ RS
Sbjct: 106 SRSRDRKRSRRSRSRSSSRSRS 127
>sp|P98081|DAB_DROME Disabled protein
Length = 2224
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Frame = -3
Query: 202 LVNPAGGRTEGSVSERLLHRACR--------RVSPRRSCRAPDRGRP 86
L P GG + + L+HRA RVSP S AP RG P
Sbjct: 1311 LTAPGGGTKDDIEIDELMHRAISNLSLDSRDRVSPATSSAAPSRGAP 1357
>sp|P27816|MAP4_HUMAN Microtubule-associated protein 4 (MAP 4)
Length = 1152
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = -2
Query: 227 ANVSRPSSTCESCRREDRRFCI*ASVA*SMPSRLATPILPSARSRAPM----KLSVEVSD 60
A++SRP ST S ++ A A +PSR+ +PS S P S + S
Sbjct: 856 ADLSRPKSTSTSSMKKTTTLSGTAPAAGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSS 915
Query: 59 RTPINKSVISSTRSP 15
TP + ++T +P
Sbjct: 916 TTPRLSRLATNTSAP 930
>sp|Q689G6|PRR95_ORYSA Two-component response regulator-like PRR95 (Pseudo-response
regulator 95) (OsPRR95)
Length = 623
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 89 APSIWRSARSAWRDAT--ACSMQQ 154
AP IW S S W+DAT A S+QQ
Sbjct: 454 APPIWNSKTSTWQDATTQAISLQQ 477
>sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfamily member Fn14 precursor
(Fibroblast growth factor-inducible immediate-early
response protein 14) (FGF-inducible 14) (Tweak-receptor)
(TweakR) (CD266 antigen)
Length = 129
Score = 28.9 bits (63), Expect = 3.8
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Frame = -2
Query: 320 RNRINRILQNT*FGVPSTTIKNRNNHQEKSLANVSRPSS---------TCESCR-REDRR 171
R + R+L+ G+ +++ Q A SR SS C SCR R
Sbjct: 3 RGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPHSD 62
Query: 170 FCI*ASVA*SMPSRLATPILPSARS 96
FC+ + A P RL PIL A S
Sbjct: 63 FCLGCAAAPPAPFRLLWPILGGALS 87
>sp|Q02343|CAC1E_RABIT Voltage-dependent R-type calcium channel alpha-1E subunit
(Voltage-gated calcium channel alpha subunit Cav2.3)
(Calcium channel, L type, alpha-1 polypeptide, isoform 6)
(Brain calcium channel II) (BII)
Length = 2259
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = -3
Query: 205 ALVNPAGGRTEGSVSERLLHRACRRVSPRRSCRAPDRGRP*NCLSRSAIAPRSINQSYLP 26
AL AGG T + +R HR +R S R R + SRS RS+++
Sbjct: 886 ALQETAGGETVVTFEDRARHRQSQRRSRHRRVRTEAKESSSASRSRSVSQERSLDEGAST 945
Query: 25 PGPR 14
G R
Sbjct: 946 EGER 949
>sp|O00221|IKBE_HUMAN NF-kappaB inhibitor epsilon (NF-kappa-BIE) (I-kappa-B-epsilon)
(IkappaBepsilon) (IKB-epsilon) (IKBE)
Length = 361
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 99 SGARQDRRGETRRHALCNRRSDTEPSVLPPAGFTSARG 212
S A QDR G+T H C R+S P+ G RG
Sbjct: 180 SRALQDRHGDTALHVACQRQSWPVPAACWKGGPEPGRG 217
>sp|Q03643|MSA2_PLAFK Merozoite surface antigen 2 precursor (MSA-2)
Length = 280
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 137 PSRLATPILPSARSRAPMKLSVEVSDRTPINKSVISSTRSPLVTS 3
P+ TP + SR+P + E + R+P + S++RSP +T+
Sbjct: 89 PTAADTPTATESNSRSPPITTTESNSRSPPITTTESNSRSPPITT 133
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-5
(Sex determination protein mog-5) (Masculinization of
germ line protein 5)
Length = 1200
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 66 DLDRQFHGRPRSGARQDRRGETRRHALCNRRSD 164
D DR+ R R R DRRG+ R+ +RR D
Sbjct: 190 DRDRRDRDRDRDRGRGDRRGDDRQRDRRDRRDD 222
>sp|Q88QJ8|SELA_PSEPK L-seryl-tRNA(Sec) selenium transferase (Cysteinyl-tRNA(Sec)
selenium transferase) (Selenocysteine synthase)
(Selenocysteinyl-tRNA(Sec) synthase)
Length = 475
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 19 DLVEDMTDLLIGVRSLTSTDNFMGALDLALGKIGVARRDGML 144
DL+E + L G ++T +N A+ LAL +G AR++G++
Sbjct: 134 DLIEGLIRELTGAEAVTVVNNNAAAVLLALNSLG-ARKEGII 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,428,974
Number of Sequences: 369166
Number of extensions: 818838
Number of successful extensions: 2300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)