Planaria EST Database


DrC_02617

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02617
         (500 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZMG1|K0776_CHICK  Protein KIAA0776 homolog                    36   0.058
sp|Q8CCJ3|K0776_MOUSE  Protein KIAA0776                            35   0.13 
sp|O94874|K0776_HUMAN  Protein KIAA0776                            33   0.38 
sp|Q60W52|GPA3_CAEBR  Guanine nucleotide-binding protein alp...    30   3.2  
sp|P42555|HTPG_BORBU  Chaperone protein htpG (Heat shock pro...    30   4.2  
sp|Q88T65|LEPA2_LACPL  GTP-binding protein lepA2                   29   7.1  
sp|Q8I8U7|TRA1_DROME  Transcription-associated protein 1 (dT...    29   7.1  
sp|Q8N3C0|HELC1_HUMAN  Activating signal cointegrator 1 comp...    28   9.3  
>sp|Q5ZMG1|K0776_CHICK Protein KIAA0776 homolog
          Length = 789

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 23/81 (28%), Positives = 40/81 (49%)
 Frame = +1

Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEKSSPNGGIDWDGLKEYQDYVIA 330
           +P+ +L +T  L+FQ      LHA G+ VP I+ FL  K   +       L +YQ  V+ 
Sbjct: 681 DPALVLHLTAVLLFQFSTHCMLHAPGRSVPQIINFLSGKIPED---QHSLLIKYQGLVVK 737

Query: 331 SIKMQNGTVEEKEAFKLSHQD 393
            +  Q+   E+++  K   ++
Sbjct: 738 QLISQSKKAEQEDDNKTEEEE 758
>sp|Q8CCJ3|K0776_MOUSE Protein KIAA0776
          Length = 793

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +1

Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEKSSPNGGIDWDGLKEYQDYVIA 330
           +P+ +L +T  L+FQ      LHA G+ VP I+ FL  K   +       L +YQ  V+ 
Sbjct: 680 DPALILHLTAVLLFQLSTHSMLHAPGRCVPQIIAFLHSKIPED---QHTLLVKYQGLVVK 736

Query: 331 SIKMQN 348
            +  QN
Sbjct: 737 QLVSQN 742
>sp|O94874|K0776_HUMAN Protein KIAA0776
          Length = 794

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEK 267
           +P+ +L +T+ L+FQ      LHA G+ VP I+ FL  K
Sbjct: 681 DPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSK 719
>sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alpha-3 subunit
          Length = 354

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
 Frame = +1

Query: 49  RNLEHITIRFDRILRRQSNGNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLPLHASG 228
           + +E + + FD+ +R      V++  K  Q  ++ P EL     AL   K I   + A G
Sbjct: 86  KGMESLRMTFDKPIRENDAKFVMEAHKMLQEAKVFPEELANALQALYSDKGIQTVM-AKG 144

Query: 229 KFVPAILEFLKEKSSPN--GGIDWDGLKEY----QDYVIASIKMQNGTVEEKEAFK 378
                  EF   +S+P+  G +D   L +Y    QD +++ IK   G VE K   K
Sbjct: 145 N------EFQMPESAPHFLGSLDRIKLPDYTPTEQDILLSRIK-TTGIVEVKFQMK 193
>sp|P42555|HTPG_BORBU Chaperone protein htpG (Heat shock protein htpG) (High temperature
           protein G)
          Length = 616

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +1

Query: 85  ILRRQSNGNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKE 264
           IL    N  ++Q  K+ + E++E   +L+   A++     G+P    GKF+  I EF+++
Sbjct: 557 ILELNPNNKIVQNLKNLEPEKLEKISILLFEEAMLTS---GMPSKNPGKFINIINEFIEK 613
>sp|Q88T65|LEPA2_LACPL GTP-binding protein lepA2
          Length = 595

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
 Frame = +1

Query: 223 SGKFVPAILEFLKEK-SSPNGGID-------WDGLKEYQDYVIASIKMQNGTVEEKEAFK 378
           +G+ VPA+LE +K++  +P G +        +D L +    VIA +++ +G ++ ++A  
Sbjct: 168 TGQGVPAVLEAIKQRLPAPQGDLHQPLKALVFDSLYDPYQGVIAYVRLIDGQLKSQQALC 227

Query: 379 L--SHQDLHQRIINI 417
           L    QD + + I +
Sbjct: 228 LMQGQQDFNGKAIGV 242
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dTRA1)
          Length = 3803

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +1

Query: 55   LEHITIRFDRILRRQSN-------GNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLP 213
            ++ I ++F R+L   +        GN +     D N    P ELLV++  LI  +I  + 
Sbjct: 2217 IDRILVQFIRVLNHLTRDHINTIGGNTVISQSPDSNAL--PLELLVLSLELIKNRIFVMS 2274

Query: 214  LHASGKFVPAILEFLKEKSS 273
            +     F+  IL  L EKS+
Sbjct: 2275 VEIRKLFIGTILVSLIEKST 2294
>sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 complex subunit 3 (ASC-1 complex
           subunit p200) (Trip4 complex subunit p200) (Helicase,
           ATP binding 1)
          Length = 2202

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 328 ASIKMQNGTVEEKEAFKLSHQDLHQRIINIALNWKSI 438
           +++  Q+   EE    K+    LH++++++ L WK I
Sbjct: 14  SNVTKQDNYNEEVADLKIKRSKLHEQVLDLGLTWKKI 50
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,075,460
Number of Sequences: 369166
Number of extensions: 1157649
Number of successful extensions: 2894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)