Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A13
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZMG1|K0776_CHICK Protein KIAA0776 homolog 36 0.058
sp|Q8CCJ3|K0776_MOUSE Protein KIAA0776 35 0.13
sp|O94874|K0776_HUMAN Protein KIAA0776 33 0.38
sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alp... 30 3.2
sp|P42555|HTPG_BORBU Chaperone protein htpG (Heat shock pro... 30 4.2
sp|Q88T65|LEPA2_LACPL GTP-binding protein lepA2 29 7.1
sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dT... 29 7.1
sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 comp... 28 9.3
>sp|Q5ZMG1|K0776_CHICK Protein KIAA0776 homolog
Length = 789
Score = 35.8 bits (81), Expect = 0.058
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEKSSPNGGIDWDGLKEYQDYVIA 330
+P+ +L +T L+FQ LHA G+ VP I+ FL K + L +YQ V+
Sbjct: 681 DPALVLHLTAVLLFQFSTHCMLHAPGRSVPQIINFLSGKIPED---QHSLLIKYQGLVVK 737
Query: 331 SIKMQNGTVEEKEAFKLSHQD 393
+ Q+ E+++ K ++
Sbjct: 738 QLISQSKKAEQEDDNKTEEEE 758
>sp|Q8CCJ3|K0776_MOUSE Protein KIAA0776
Length = 793
Score = 34.7 bits (78), Expect = 0.13
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEKSSPNGGIDWDGLKEYQDYVIA 330
+P+ +L +T L+FQ LHA G+ VP I+ FL K + L +YQ V+
Sbjct: 680 DPALILHLTAVLLFQLSTHSMLHAPGRCVPQIIAFLHSKIPED---QHTLLVKYQGLVVK 736
Query: 331 SIKMQN 348
+ QN
Sbjct: 737 QLVSQN 742
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 33.1 bits (74), Expect = 0.38
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 151 EPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKEK 267
+P+ +L +T+ L+FQ LHA G+ VP I+ FL K
Sbjct: 681 DPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSK 719
>sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alpha-3 subunit
Length = 354
Score = 30.0 bits (66), Expect = 3.2
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Frame = +1
Query: 49 RNLEHITIRFDRILRRQSNGNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLPLHASG 228
+ +E + + FD+ +R V++ K Q ++ P EL AL K I + A G
Sbjct: 86 KGMESLRMTFDKPIRENDAKFVMEAHKMLQEAKVFPEELANALQALYSDKGIQTVM-AKG 144
Query: 229 KFVPAILEFLKEKSSPN--GGIDWDGLKEY----QDYVIASIKMQNGTVEEKEAFK 378
EF +S+P+ G +D L +Y QD +++ IK G VE K K
Sbjct: 145 N------EFQMPESAPHFLGSLDRIKLPDYTPTEQDILLSRIK-TTGIVEVKFQMK 193
>sp|P42555|HTPG_BORBU Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 616
Score = 29.6 bits (65), Expect = 4.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 85 ILRRQSNGNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLPLHASGKFVPAILEFLKE 264
IL N ++Q K+ + E++E +L+ A++ G+P GKF+ I EF+++
Sbjct: 557 ILELNPNNKIVQNLKNLEPEKLEKISILLFEEAMLTS---GMPSKNPGKFINIINEFIEK 613
>sp|Q88T65|LEPA2_LACPL GTP-binding protein lepA2
Length = 595
Score = 28.9 bits (63), Expect = 7.1
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Frame = +1
Query: 223 SGKFVPAILEFLKEK-SSPNGGID-------WDGLKEYQDYVIASIKMQNGTVEEKEAFK 378
+G+ VPA+LE +K++ +P G + +D L + VIA +++ +G ++ ++A
Sbjct: 168 TGQGVPAVLEAIKQRLPAPQGDLHQPLKALVFDSLYDPYQGVIAYVRLIDGQLKSQQALC 227
Query: 379 L--SHQDLHQRIINI 417
L QD + + I +
Sbjct: 228 LMQGQQDFNGKAIGV 242
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dTRA1)
Length = 3803
Score = 28.9 bits (63), Expect = 7.1
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 55 LEHITIRFDRILRRQSN-------GNVLQVPKSDQNEQIEPSELLVITTALIFQKIIGLP 213
++ I ++F R+L + GN + D N P ELLV++ LI +I +
Sbjct: 2217 IDRILVQFIRVLNHLTRDHINTIGGNTVISQSPDSNAL--PLELLVLSLELIKNRIFVMS 2274
Query: 214 LHASGKFVPAILEFLKEKSS 273
+ F+ IL L EKS+
Sbjct: 2275 VEIRKLFIGTILVSLIEKST 2294
>sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 complex subunit 3 (ASC-1 complex
subunit p200) (Trip4 complex subunit p200) (Helicase,
ATP binding 1)
Length = 2202
Score = 28.5 bits (62), Expect = 9.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 328 ASIKMQNGTVEEKEAFKLSHQDLHQRIINIALNWKSI 438
+++ Q+ EE K+ LH++++++ L WK I
Sbjct: 14 SNVTKQDNYNEEVADLKIKRSKLHEQVLDLGLTWKKI 50
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,075,460
Number of Sequences: 369166
Number of extensions: 1157649
Number of successful extensions: 2894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)