Planaria EST Database


DrC_02616

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02616
         (586 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BPP5|U3023_MOUSE  Protein UNQ3023/PRO9821 precursor           29   7.5  
sp|P36894|BMR1A_HUMAN  Bone morphogenetic protein receptor t...    29   9.8  
>sp|Q8BPP5|U3023_MOUSE Protein UNQ3023/PRO9821 precursor
          Length = 171

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 2   KSCVSKDQCFKVKDQFASSCYREYYMDWK-CAECCEGELCN 121
           K CV  ++C       ++ C    +  +K C  CCEG +CN
Sbjct: 94  KRCVPLEECL------STGCRDSEHEGYKICTSCCEGNICN 128
>sp|P36894|BMR1A_HUMAN Bone morphogenetic protein receptor type IA precursor
           (Serine/threonine-protein kinase receptor R5) (SKR5)
           (Activin receptor-like kinase 3) (ALK-3) (CD292 antigen)
          Length = 532

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 18/59 (30%)
 Frame = +2

Query: 5   SCVSKDQCFKVKDQ-------FASSCYREYYMDWKCA-----------ECCEGELCNYY 127
           +C++   CF + ++        AS C +    D++C            ECC   LCN Y
Sbjct: 75  TCITNGHCFAIIEEDDQGETTLASGCMKYEGSDFQCKDSPKAQLRRTIECCRTNLCNQY 133
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,976,296
Number of Sequences: 369166
Number of extensions: 1076613
Number of successful extensions: 2830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)