Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A08
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BPP5|U3023_MOUSE Protein UNQ3023/PRO9821 precursor 29 7.5
sp|P36894|BMR1A_HUMAN Bone morphogenetic protein receptor t... 29 9.8
>sp|Q8BPP5|U3023_MOUSE Protein UNQ3023/PRO9821 precursor
Length = 171
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 2 KSCVSKDQCFKVKDQFASSCYREYYMDWK-CAECCEGELCN 121
K CV ++C ++ C + +K C CCEG +CN
Sbjct: 94 KRCVPLEECL------STGCRDSEHEGYKICTSCCEGNICN 128
>sp|P36894|BMR1A_HUMAN Bone morphogenetic protein receptor type IA precursor
(Serine/threonine-protein kinase receptor R5) (SKR5)
(Activin receptor-like kinase 3) (ALK-3) (CD292 antigen)
Length = 532
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 18/59 (30%)
Frame = +2
Query: 5 SCVSKDQCFKVKDQ-------FASSCYREYYMDWKCA-----------ECCEGELCNYY 127
+C++ CF + ++ AS C + D++C ECC LCN Y
Sbjct: 75 TCITNGHCFAIIEEDDQGETTLASGCMKYEGSDFQCKDSPKAQLRRTIECCRTNLCNQY 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,976,296
Number of Sequences: 369166
Number of extensions: 1076613
Number of successful extensions: 2830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)