Planaria EST Database


DrC_02613

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02613
         (849 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ZAN0|FADB_YERPE  Fatty oxidation complex alpha subunit ...    84   4e-16
sp|P21177|FADB_ECOLI  Fatty oxidation complex alpha subunit ...    81   4e-15
sp|Q8X8I2|FADB_ECO57  Fatty oxidation complex alpha subunit ...    80   9e-15
sp|Q8Z3C6|FADB_SALTI  Fatty oxidation complex alpha subunit ...    79   2e-14
sp|Q9L6L5|FADB_SALTY  Fatty oxidation complex alpha subunit ...    79   2e-14
sp|Q13825|AUMH_HUMAN  Methylglutaconyl-CoA hydratase, mitoch...    79   2e-14
sp|Q9JLZ3|AUHM_MOUSE  Methylglutaconyl-CoA hydratase, mitoch...    78   3e-14
sp|P52046|CRT_CLOAB  3-hydroxybutyryl-CoA dehydratase (Croto...    78   4e-14
sp|Q5R646|ECHM_PONPY  Enoyl-CoA hydratase, mitochondrial pre...    70   6e-12
sp|Q64428|ECHA_RAT  Trifunctional enzyme alpha subunit, mito...    69   2e-11
>sp|Q8ZAN0|FADB_YERPE Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA
           hydratase ; Delta(3)-cis-delta(2)-trans-enoyl-CoA
           isomerase ; 3-hydroxyacyl-CoA dehydrogenase ;
           3-hydroxybutyryl-CoA epimerase ]
          Length = 729

 Score = 84.3 bits (207), Expect = 4e-16
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 3/207 (1%)
 Frame = +1

Query: 202 FDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPP-KALIXXXXXX 378
           +   ++ L  + N I+ L+ D P S N L  K ++ L + + +LE Q   K L+      
Sbjct: 3   YQSETLQLHWLENGIAELVFDAPGSVNKLDTKTVANLGEALNVLEKQSELKGLLLRSAKT 62

Query: 379 XXXXXXNLKFVEKISNSNDGD--RMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELIL 552
                 ++     + N+      +   F  ++  ++E LP  +++ I   A GGG E IL
Sbjct: 63  ALIVGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECIL 122

Query: 553 CCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIG 732
             DFR  +   ++   + KLG+  G+GG  +L +L+G  + L+++   + + A  AL+IG
Sbjct: 123 ATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIG 182

Query: 733 LVDKILNSNTPDERLEETVQNVKCIID 813
           LVD +++   P++ +   +  +K  ID
Sbjct: 183 LVDAVVD---PEKLVGSALTMLKQAID 206
>sp|P21177|FADB_ECOLI Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA
           hydratase ; Delta(3)-cis-delta(2)-trans-enoyl-CoA
           isomerase ; 3-hydroxyacyl-CoA dehydrogenase ;
           3-hydroxybutyryl-CoA epimerase ]
          Length = 729

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 3/206 (1%)
 Frame = +1

Query: 202 FDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPP-KALIXXXXXX 378
           + G ++YL  + + I+ L+ D P S N L    ++ L + + +LE Q   K L+      
Sbjct: 3   YKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKA 62

Query: 379 XXXXXXNL-KFVEKISNSNDG-DRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELIL 552
                 ++ +F+       +   +   F  S+  ++E LP  ++A +   A GGG E +L
Sbjct: 63  AFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVL 122

Query: 553 CCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIG 732
             D+R    + ++   + KLG+  G+GG  ++ +++G  + L+++   + + A +AL+IG
Sbjct: 123 ATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIG 182

Query: 733 LVDKILNSNTPDERLEETVQNVKCII 810
           LVD ++       + E+ V+  K ++
Sbjct: 183 LVDGVV-------KAEKLVEGAKAVL 201
>sp|Q8X8I2|FADB_ECO57 Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA
           hydratase ; Delta(3)-cis-delta(2)-trans-enoyl-CoA
           isomerase ; 3-hydroxyacyl-CoA dehydrogenase ;
           3-hydroxybutyryl-CoA epimerase ]
          Length = 729

 Score = 79.7 bits (195), Expect = 9e-15
 Identities = 47/188 (25%), Positives = 96/188 (51%), Gaps = 3/188 (1%)
 Frame = +1

Query: 202 FDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPP-KALIXXXXXX 378
           + G ++YL  + + I+ L+ D P S N L    ++ L + + +LE Q   K L+      
Sbjct: 3   YKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKA 62

Query: 379 XXXXXXNL-KFVEKISNSNDG-DRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELIL 552
                 ++ +F+       +   +   F  S+  ++E LP  ++A +   A GGG E +L
Sbjct: 63  AFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVL 122

Query: 553 CCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIG 732
             D+R    + ++   + KLG+  G+GG  ++ +++G  + L+++   + + A +AL+IG
Sbjct: 123 ATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIG 182

Query: 733 LVDKILNS 756
           LVD ++ +
Sbjct: 183 LVDGVVKA 190
>sp|Q8Z3C6|FADB_SALTI Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA
           hydratase ; Delta(3)-cis-delta(2)-trans-enoyl-CoA
           isomerase ; 3-hydroxyacyl-CoA dehydrogenase ;
           3-hydroxybutyryl-CoA epimerase ]
          Length = 729

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
 Frame = +1

Query: 202 FDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPP-KALIXXXXXX 378
           + G ++YL  + + I+ L+ D P S N L    ++ L   +++LE Q   K L+      
Sbjct: 3   YKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKA 62

Query: 379 XXXXXXNL-KFVEK-ISNSNDGDRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELIL 552
                 ++ +F+   +       +   F  S+  ++E LP  ++A +   A GGG E +L
Sbjct: 63  AFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVL 122

Query: 553 CCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIG 732
             D+R    + ++   + KLG+  G+GG  +L +++G  + L+++   + + A+ AL+IG
Sbjct: 123 ATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIG 182

Query: 733 LVDKIL 750
           LVD ++
Sbjct: 183 LVDGVV 188
>sp|Q9L6L5|FADB_SALTY Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA
           hydratase ; Delta(3)-cis-delta(2)-trans-enoyl-CoA
           isomerase ; 3-hydroxyacyl-CoA dehydrogenase ;
           3-hydroxybutyryl-CoA epimerase ]
          Length = 729

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
 Frame = +1

Query: 202 FDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPP-KALIXXXXXX 378
           + G ++YL  + + I+ L+ D P S N L    ++ L   +++LE Q   K L+      
Sbjct: 3   YKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKA 62

Query: 379 XXXXXXNL-KFVEK-ISNSNDGDRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELIL 552
                 ++ +F+   +       +   F  S+  ++E LP  ++A +   A GGG E +L
Sbjct: 63  AFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVL 122

Query: 553 CCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIG 732
             D+R    + ++   + KLG+  G+GG  +L +++G  + L+++   + + A+ AL+IG
Sbjct: 123 ATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIG 182

Query: 733 LVDKIL 750
           LVD ++
Sbjct: 183 LVDGVV 188
>sp|Q13825|AUMH_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial precursor
           (AU-specific RNA-binding enoyl-CoA hydratase)
           (AU-binding protein/enoyl-CoA hydratase)
          Length = 339

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 2/203 (0%)
 Frame = +1

Query: 157 RNYSSISSIKDWLNDFDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILE 336
           R YSS    +D L        +L+  N  I  L I+     NSL+  ++  L   V  L+
Sbjct: 65  RGYSSEMKTEDELR-----VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALK 119

Query: 337 NQPP--KALIXXXXXXXXXXXXNLKFVEKISNSNDGDRMCKFMQSLTRKIEKLPSLSVAL 510
           +       +I            +LK   K+S+S  G  + K ++++   I  LP  ++A 
Sbjct: 120 SDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAA 178

Query: 511 IESVAYGGGAELILCCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLL 690
           I+ +A GGG EL L CD R  A + K+   + KL +  G GG  +L + IG     +L+ 
Sbjct: 179 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIF 238

Query: 691 NTEVINAQKALEIGLVDKILNSN 759
           +  V++ ++A  +GL+  +L  N
Sbjct: 239 SARVLDGKEAKAVGLISHVLEQN 261
>sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial precursor
           (AU-specific RNA-binding enoyl-CoA hydratase)
           (AU-binding enoyl-CoA hydratase) (muAUH)
          Length = 314

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 2/203 (0%)
 Frame = +1

Query: 157 RNYSSISSIKDWLNDFDGGSVYLKSINNDISHLIIDNPESHNSLTGKMMSQLDDCVQILE 336
           R YSS    +D L        +L+  N  I  L I+     N+L+  ++  L   V  L+
Sbjct: 40  RGYSSEVKTEDELR-----VRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSKAVDALK 94

Query: 337 NQPP--KALIXXXXXXXXXXXXNLKFVEKISNSNDGDRMCKFMQSLTRKIEKLPSLSVAL 510
           +       +I            +LK   K+ +S  G  + K ++S+   I  LP  ++A 
Sbjct: 95  SDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSK-IRSVINDIANLPVPTIAA 153

Query: 511 IESVAYGGGAELILCCDFRYIAQNGKLSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLL 690
           I+ +A GGG EL L CD R  A + K+   + KL +  G GG  +L + IG     +L+ 
Sbjct: 154 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIF 213

Query: 691 NTEVINAQKALEIGLVDKILNSN 759
           +  V++ Q+A  +GL+  +L  N
Sbjct: 214 SARVLDGQEAKAVGLISHVLEQN 236
>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase (Crotonase)
          Length = 261

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 1/202 (0%)
 Frame = +1

Query: 244 ISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPPKALIXXXXXXXXXXXXNLKFVE-KI 420
           ++ + I+ P++ N+L    + ++D  +  +EN      +                 E K 
Sbjct: 14  VAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKE 73

Query: 421 SNSNDGDRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELILCCDFRYIAQNGKLSFK 600
            N+ +G +       + R++E L    +A +   A GGG E+ + CD R  + N +    
Sbjct: 74  MNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQP 133

Query: 601 QRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIGLVDKILNSNTPDERLE 780
           +  LG+T G+GG  +L +L+G     +L+   + I A +AL IGLV+K++  +       
Sbjct: 134 EVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPS------- 186

Query: 781 ETVQNVKCIIDEIPQNVLFAIK 846
           E +   K I ++I  N   A+K
Sbjct: 187 ELMNTAKEIANKIVSNAPVAVK 208
>sp|Q5R646|ECHM_PONPY Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
           hydratase) (SCEH) (Enoyl-CoA hydratase 1)
          Length = 290

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 2/188 (1%)
 Frame = +1

Query: 235 NNDISHLIIDNPESHNSLTGKMMSQLDDCVQILENQPPK-ALIXXXXXXXXXXXXNLKFV 411
           NN +  + ++ P++ N+L   ++ +L+  ++I E  P   A++            ++K +
Sbjct: 44  NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEM 103

Query: 412 EKISNSND-GDRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELILCCDFRYIAQNGK 588
           + +S  +    +  K    LT+    +    +A +   A+GGG EL + CD  Y  +  +
Sbjct: 104 QNLSFQDCYSSKFLKHWDHLTQ----IKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQ 159

Query: 589 LSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIGLVDKILNSNTPD 768
            +  +  +G   G GG  +L + +GK   ++++L  + I+AQ A + GLV KI    T  
Sbjct: 160 FAQPEILIGTIPGAGGTQRLTRTVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVET-- 217

Query: 769 ERLEETVQ 792
             +EE +Q
Sbjct: 218 -LVEEAIQ 224
>sp|Q64428|ECHA_RAT Trifunctional enzyme alpha subunit, mitochondrial precursor
           (TP-alpha) [Includes: Long-chain enoyl-CoA hydratase ;
           Long chain 3-hydroxyacyl-CoA dehydrogenase ]
          Length = 763

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 48/199 (24%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
 Frame = +1

Query: 232 INNDISHLIIDNPESH-NSLTGKMMSQLDDCVQIL--ENQPPKALIXXXXXXXXXXXXNL 402
           +  D++ + I++P S  N+L  ++ S+  + +  +   +Q   A++            ++
Sbjct: 45  VKGDVAVIRINSPNSKVNTLNKEVQSEFVEVMNEIWANDQIRSAVLISSKPGCFVAGADI 104

Query: 403 KFVEKISNSNDGDRMCKFMQSLTRKIEKLPSLSVALIESVAYGGGAELILCCDFRYIAQN 582
             +   +   +  R+ +  Q +  K+EK P   VA I     GGG EL + C +R   ++
Sbjct: 105 NMLASCTTPQEAARISQEGQKMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATKD 164

Query: 583 GK--LSFKQRKLGVTTGWGGCHKLIQLIGKQATLKLLLNTEVINAQKALEIGLVDKILNS 756
            K  L   +  LG+  G GG  +L +++G  A   ++L    I A +A ++GLVD++++ 
Sbjct: 165 RKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVDP 224

Query: 757 -----NTPDERLEETVQNV 798
                 +P+ER  E ++ V
Sbjct: 225 LGPGIKSPEERTIEYLEEV 243
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,033,593
Number of Sequences: 369166
Number of extensions: 1662782
Number of successful extensions: 4330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4321
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)