Planaria EST Database


DrC_02597

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02597
         (791 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10752|CDC28_SCHPO  Putative ATP-dependent RNA helicase c...   145   9e-35
sp|Q9P774|PRP16_SCHPO  Pre-mRNA splicing factor RNA helicase...   145   2e-34
sp|P45018|HRPA_HAEIN  ATP-dependent helicase hrpA homolog         144   2e-34
sp|Q14562|DHX8_HUMAN  ATP-dependent helicase DHX8 (RNA helic...   144   4e-34
sp|O42643|DHX8_SCHPO  Putative pre-mRNA splicing factor ATP-...   143   5e-34
sp|Q9H6R0|DHX33_HUMAN  Putative ATP-dependent helicase DHX33...   143   5e-34
sp|P43329|HRPA_ECOLI  ATP-dependent helicase hrpA                 143   5e-34
sp|Q9HDY4|YK16_SCHPO  Putative ATP-dependent RNA helicase PB...   143   6e-34
sp|O35286|DHX15_MOUSE  Putative pre-mRNA splicing factor RNA...   141   2e-33
sp|O43143|DHX15_HUMAN  Putative pre-mRNA splicing factor RNA...   141   2e-33
>sp|Q10752|CDC28_SCHPO Putative ATP-dependent RNA helicase cdc28
          Length = 1055

 Score =  145 bits (367), Expect = 9e-35
 Identities = 94/262 (35%), Positives = 141/262 (53%), Gaps = 9/262 (3%)
 Frame = +1

Query: 31   GDILIFL--QTELKVRK------CRKVLKNLKRTRVLKFFANMDYDDKLRVFDDFSP-YR 183
            GDIL+FL  Q E+++        CR + K +    +   +AN+  + + ++FD   P  R
Sbjct: 628  GDILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPGAR 687

Query: 184  KIIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGR 363
            K+++ATNIAETS+TI GV+FVIDSG VK+  ++  T +E  VS   S   ADQR GR GR
Sbjct: 688  KVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGR 747

Query: 364  TGPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQAN 543
             GPG C+RLY     + T  NE D                             PEI + N
Sbjct: 748  VGPGKCFRLY----TRRTYNNELD-------------------------MVTSPEIQRTN 778

Query: 544  LGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTDLTKLGKRVSFLP 723
            L N++L+LKSLGI++++ F F+  P    +  +++ L  L  L+   +LTKLG++++  P
Sbjct: 779  LTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFP 838

Query: 724  LEPRLGKVVCMGSSFRCSRDVL 789
             +P L K +   S + C  +VL
Sbjct: 839  TDPMLSKSLIASSKYGCVEEVL 860
>sp|Q9P774|PRP16_SCHPO Pre-mRNA splicing factor RNA helicase prp16
          Length = 1173

 Score =  145 bits (365), Expect = 2e-34
 Identities = 85/262 (32%), Positives = 139/262 (53%), Gaps = 9/262 (3%)
 Frame = +1

Query: 31   GDILIFLQTELKVRKCRKV-------LKNLKRTRVLKFFANMDYDDKLRVFDDFSP-YRK 186
            GDIL+F+  +  +    ++       L +  R  +L  ++ M  D + ++FD   P  RK
Sbjct: 701  GDILVFMTGQEDIEATCEIIADRLNQLHDAPRLSILPIYSQMPADLQAKIFDSAEPGVRK 760

Query: 187  IIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGRT 366
            +++ATNIAETSLT+ G+ +V+D+G  K   ++ +  ++    T IS   A+QR GR GRT
Sbjct: 761  VVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRT 820

Query: 367  GPGCCYRLYEE-SFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQAN 543
            GPG  YRLY E ++I+E  E                                LPEI + N
Sbjct: 821  GPGIAYRLYTEMAYIREMFET------------------------------TLPEIQRTN 850

Query: 544  LGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTDLTKLGKRVSFLP 723
            L N +LILKSLG+++I  F F+  P    + +++ +L  L  LD    LT LGK++S  P
Sbjct: 851  LSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFP 910

Query: 724  LEPRLGKVVCMGSSFRCSRDVL 789
            ++P L K++ +   ++C+ +++
Sbjct: 911  MDPSLSKLIIIAEDYKCTEEII 932
>sp|P45018|HRPA_HAEIN ATP-dependent helicase hrpA homolog
          Length = 1304

 Score =  144 bits (364), Expect = 2e-34
 Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 9/263 (3%)
 Frame = +1

Query: 28  KGDILIFLQTELKVRKCRKVLK--NLKRTRVLKFFANMDYDDKLRVFDDFSPYRKIIIAT 201
           +GDILIF+  E ++R   + L+  NLK T +L  FA +   ++ ++F   S   +I++AT
Sbjct: 294 RGDILIFMNGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHP-SGLNRIVLAT 352

Query: 202 NIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGRTGPGCC 381
           N+AETSLT+P + +VID G  +   + + T V++     IS   A+QRKGR GR   G C
Sbjct: 353 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 412

Query: 382 YRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQANLGNMIL 561
            RLY E      D N   E                         F  PEIL+ NL ++IL
Sbjct: 413 IRLYSEE-----DFNSRPE-------------------------FTDPEILRTNLASVIL 442

Query: 562 ILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLD-------RNTDLTKLGKRVSFL 720
            + +LG+DDI  FPF+  P+E H++  V  L +L   +           LT++G++++ L
Sbjct: 443 QMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQL 502

Query: 721 PLEPRLGKVVCMGSSFRCSRDVL 789
           P++PRL K++    +F C  +++
Sbjct: 503 PVDPRLAKMILSAVNFGCVYEMM 525
>sp|Q14562|DHX8_HUMAN ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8)
          Length = 1220

 Score =  144 bits (362), Expect = 4e-34
 Identities = 93/262 (35%), Positives = 145/262 (55%), Gaps = 9/262 (3%)
 Frame = +1

Query: 31   GDILIFLQTELKVRKCRKVLKNLKRTR--------VLKFFANMDYDDKLRVFDDFSP-YR 183
            GDIL+FL  + ++    ++L    ++         +L  ++ +  + + R+FD   P  R
Sbjct: 774  GDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSR 833

Query: 184  KIIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGR 363
            K++IATNIAETSLTI G+ +V+D G VK+  ++ +T +++ V T IS  +A QR GR GR
Sbjct: 834  KVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGR 893

Query: 364  TGPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQAN 543
            TGPG CYRLY       T+    DE +                TN       +PEI + N
Sbjct: 894  TGPGKCYRLY-------TERAYRDEML---------------TTN-------VPEIQRTN 924

Query: 544  LGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTDLTKLGKRVSFLP 723
            L + +L LK++GI+D++ F F+  P    + +A++QL  L  LD    LT+LG+R++  P
Sbjct: 925  LASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFP 984

Query: 724  LEPRLGKVVCMGSSFRCSRDVL 789
            LEP L K++ M     CS ++L
Sbjct: 985  LEPMLCKMLIMSVHLGCSEEML 1006
>sp|O42643|DHX8_SCHPO Putative pre-mRNA splicing factor ATP-dependent RNA helicase
            C10F6.02c
          Length = 1168

 Score =  143 bits (361), Expect = 5e-34
 Identities = 92/262 (35%), Positives = 141/262 (53%), Gaps = 9/262 (3%)
 Frame = +1

Query: 31   GDILIFL--------QTELKVRKCRKVLKNLKRTRVLKFFANMDYDDKLRVFDDFSPY-R 183
            GDIL+FL          E+   + + +  ++    +L  ++ +  + + R+F+   P  R
Sbjct: 720  GDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGR 779

Query: 184  KIIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGR 363
            K++IATNIAETSLTI G+ +V+D G VK+  FD +  ++  + T IS  +A QR GR GR
Sbjct: 780  KVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGR 839

Query: 364  TGPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQAN 543
            TGPG CYRLY ES  +    NE   S                         P+PEI + N
Sbjct: 840  TGPGKCYRLYTESAYR----NEMLPS-------------------------PIPEIQRQN 870

Query: 544  LGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTDLTKLGKRVSFLP 723
            L + IL+LK++GI+D++ F F+  P    + +A+  L  LS LD    LT LG++++  P
Sbjct: 871  LSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFP 930

Query: 724  LEPRLGKVVCMGSSFRCSRDVL 789
            +EP+L KV+       CS ++L
Sbjct: 931  MEPQLSKVLITSVELGCSEEML 952
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent helicase DHX33 (DEAH-box protein 33)
          Length = 707

 Score =  143 bits (361), Expect = 5e-34
 Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 12/264 (4%)
 Frame = +1

Query: 34  DILIFL----QTELKVRKCRKVLKNLK----RTRVLKFFANMDYDDKLRVFDDFSP-YRK 186
           DIL+FL    + E   + CR + K+L        VL  +A++ Y  +LRVF      YRK
Sbjct: 290 DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRK 349

Query: 187 IIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGRT 366
           +II+TNIAETS+TI G+ +V+D+G VK   ++ ++ +E      +S T+A QR GR GR 
Sbjct: 350 VIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGRE 409

Query: 367 GPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQANL 546
             G CYRLY E      DE E                        +F +  +PEI + NL
Sbjct: 410 DSGICYRLYTE------DEFE------------------------KFDKMTVPEIQRCNL 439

Query: 547 GNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTD---LTKLGKRVSF 717
            +++L L ++ + +++ F F+  P+  H+++A+ QL  L  L+   D   LT +G++++ 
Sbjct: 440 ASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAA 499

Query: 718 LPLEPRLGKVVCMGSSFRCSRDVL 789
            PLEP+  K + M   F C+ ++L
Sbjct: 500 FPLEPKFAKTILMSPKFHCTEEIL 523
>sp|P43329|HRPA_ECOLI ATP-dependent helicase hrpA
          Length = 1300

 Score =  143 bits (361), Expect = 5e-34
 Identities = 89/267 (33%), Positives = 139/267 (52%), Gaps = 8/267 (2%)
 Frame = +1

Query: 13  LSKTKKGDILIFLQTELKVRKCRKVLK--NLKRTRVLKFFANMDYDDKLRVFDDFSPYRK 186
           LS+   GDILIF+  E ++R     L   NL+ T +L  +A +   ++ RVF   S  R+
Sbjct: 285 LSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSG-RR 343

Query: 187 IIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISVTEADQRKGRTGRT 366
           I++ATN+AETSLT+PG+ +VID G  +   + + T V++     IS   A+QRKGR GR 
Sbjct: 344 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 403

Query: 367 GPGCCYRLY-EESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRFHRFPLPEILQAN 543
             G C RLY E+ F+   +                               F  PEIL+ N
Sbjct: 404 SEGICIRLYSEDDFLSRPE-------------------------------FTDPEILRTN 432

Query: 544 LGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTD-----LTKLGKR 708
           L ++IL + +LG+ DI  FPF+  P++ +++  V  L +L  +  +       LT LG++
Sbjct: 433 LASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQ 492

Query: 709 VSFLPLEPRLGKVVCMGSSFRCSRDVL 789
           +S LP++PRL ++V       C R+ +
Sbjct: 493 LSQLPVDPRLARMVLEAQKHGCVREAM 519
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
          Length = 1183

 Score =  143 bits (360), Expect = 6e-34
 Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 2/223 (0%)
 Frame = +1

Query: 112  VLKFFANMDYDDKLRVFDDFSP--YRKIIIATNIAETSLTIPGVDFVIDSGAVKRISFDH 285
            VL  ++ +  +D+++VFD  SP  +R  I+ATN+AETS+TIP + +V+D G  K   ++ 
Sbjct: 704  VLPLYSLLTTEDQMKVFDS-SPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNE 762

Query: 286  ETWVEKWVSTYISVTEADQRKGRTGRTGPGCCYRLYEESFIKETDENEEDESIYDIKFPF 465
            +T V+K+   +IS   ADQR GR GRTGPG CYRLY               +++D  FP 
Sbjct: 763  KTSVQKFEVRWISKANADQRAGRAGRTGPGHCYRLY-------------SSAVFDSSFPL 809

Query: 466  YCQEKKESETNKRFHRFPLPEILQANLGNMILILKSLGIDDIMRFPFIVYPNESHVKSAV 645
            +                 LPEIL+  + +++L +K++ ID+I  FPF   P  S ++ ++
Sbjct: 810  H----------------SLPEILRTPVESIVLQMKNMNIDNIANFPFPTSPGRSRLEKSL 853

Query: 646  DQLTKLSLLDRNTDLTKLGKRVSFLPLEPRLGKVVCMGSSFRC 774
              L+ L  +D    LTKLG+++S  PL PR  K++ +G    C
Sbjct: 854  KLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGC 896
>sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
          Length = 795

 Score =  141 bits (355), Expect = 2e-33
 Identities = 90/274 (32%), Positives = 144/274 (52%), Gaps = 15/274 (5%)
 Frame = +1

Query: 13   LSKTKKGDILIFLQTELKVRKCRKVLKN--------LKRTRVLKFFANMDYDDKLRVFDD 168
            + + ++GD+L+FL  + ++ +  K +K         +   +++  ++ +    + R+F+ 
Sbjct: 344  MCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEP 403

Query: 169  FSPY-------RKIIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISV 327
              P        RK++++TNIAETSLTI GV FVID G  K+  ++    VE  + T IS 
Sbjct: 404  PPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISK 463

Query: 328  TEADQRKGRTGRTGPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRF 507
              A QR GR GRT PG C+RLY E   K     E  ++ Y                    
Sbjct: 464  ASAQQRAGRAGRTRPGKCFRLYTEKAYK----TEMQDNTY-------------------- 499

Query: 508  HRFPLPEILQANLGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTD 687
                 PEIL++NLG+++L LK LGIDD++ F F+  P    +  A++ L  L+ L+ + D
Sbjct: 500  -----PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGD 554

Query: 688  LTKLGKRVSFLPLEPRLGKVVCMGSSFRCSRDVL 789
            LT+LG  ++  PL+P+L K+V     + CS +VL
Sbjct: 555  LTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVL 588
>sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
            (ATP-dependent RNA helicase #46)
          Length = 795

 Score =  141 bits (355), Expect = 2e-33
 Identities = 90/274 (32%), Positives = 144/274 (52%), Gaps = 15/274 (5%)
 Frame = +1

Query: 13   LSKTKKGDILIFLQTELKVRKCRKVLKN--------LKRTRVLKFFANMDYDDKLRVFDD 168
            + + ++GD+L+FL  + ++ +  K +K         +   +++  ++ +    + R+F+ 
Sbjct: 344  MCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEP 403

Query: 169  FSPY-------RKIIIATNIAETSLTIPGVDFVIDSGAVKRISFDHETWVEKWVSTYISV 327
              P        RK++++TNIAETSLTI GV FVID G  K+  ++    VE  + T IS 
Sbjct: 404  PPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISK 463

Query: 328  TEADQRKGRTGRTGPGCCYRLYEESFIKETDENEEDESIYDIKFPFYCQEKKESETNKRF 507
              A QR GR GRT PG C+RLY E   K     E  ++ Y                    
Sbjct: 464  ASAQQRAGRAGRTRPGKCFRLYTEKAYK----TEMQDNTY-------------------- 499

Query: 508  HRFPLPEILQANLGNMILILKSLGIDDIMRFPFIVYPNESHVKSAVDQLTKLSLLDRNTD 687
                 PEIL++NLG+++L LK LGIDD++ F F+  P    +  A++ L  L+ L+ + D
Sbjct: 500  -----PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGD 554

Query: 688  LTKLGKRVSFLPLEPRLGKVVCMGSSFRCSRDVL 789
            LT+LG  ++  PL+P+L K+V     + CS +VL
Sbjct: 555  LTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVL 588
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,396,778
Number of Sequences: 369166
Number of extensions: 1621773
Number of successful extensions: 4931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4895
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)