Planaria EST Database


DrC_02593

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02593
         (742 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34732|SEC18_CANAL  Vesicular-fusion protein SEC18              34   0.47 
sp|P58132|RPOC2_ASTLO  DNA-directed RNA polymerase beta'' ch...    34   0.47 
sp|Q8K9K0|FLGK_BUCAP  Flagellar hook-associated protein 1 (H...    33   1.0  
sp|P03456|HEMA_IATKP  Hemagglutinin precursor [Contains: Hem...    32   1.4  
sp|Q8K9E8|Y389_BUCAP  Hypothetical UPF0169 protein BUsg389         32   1.4  
sp|P34771|RK23_ASTLO  Plastid 50S ribosomal protein L23            31   3.0  
sp|P40233|CKI1_SCHPO  Casein kinase I homolog cki1                 31   3.0  
sp|P23643|VPS3_YEAST  Vacuolar protein sorting-associated pr...    31   4.0  
sp|P34050|VP43_NPVAC  43 KD PROTEIN                                31   4.0  
sp|P36083|YKH5_YEAST  Hypothetical 52.1 kDa protein in SMY1-...    30   5.2  
>sp|P34732|SEC18_CANAL Vesicular-fusion protein SEC18
          Length = 794

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +1

Query: 265 LIDKVIDKLNNMKDPSFIFGMKLLSK-------NWNMIFNNKFCEWFSKLISDKSDVRKC 423
           LI + + K+ N K+P  + G ++LSK       N   +F +   E+  KL  + SD+   
Sbjct: 325 LIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEY--KLKGEDSDLHVI 382

Query: 424 LFTIKDSIHALNRSGKQD 477
           +F   DS+     SGK D
Sbjct: 383 IFDELDSVFKQRGSGKSD 400
>sp|P58132|RPOC2_ASTLO DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
           polymerase beta'' subunit) (RNA polymerase beta''
           subunit)
          Length = 817

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
 Frame = +1

Query: 16  ISKIPNYVIPETYFNNVMTVFNKLDGQQASINNDFLT--NFVAYINRAYPSKKSEYIIEI 189
           + KI + +  + Y N     FN L      +N +F+T   F   +      KK  Y I  
Sbjct: 440 VKKIKSNISGKKYINKKNKKFNNL---YWILNANFITFNKFYHKLTDKLNFKKKSYTISK 496

Query: 190 WFYCVCHDINNEDLNSIMDSEVSQQLIDKVIDKLNNMK------DPSFIFGMKLLSKNWN 351
                    N +D N    S+ + QL   + + LNNM+      +  FIF  ++L+KN  
Sbjct: 497 ---------NMQDKNK--KSKKNLQLKISIKNILNNMEKKKSKTNKKFIFINEILNKNKT 545

Query: 352 MIFNNKFCEWFSKLISDKSDVRKCLFTIKDSIHALNRS 465
           +I N    E   K+I++K  + K  F +KD I   NR+
Sbjct: 546 IILNKPKKE---KIINNKWKIGK--FILKDEITNKNRN 578
>sp|Q8K9K0|FLGK_BUCAP Flagellar hook-associated protein 1 (HAP1)
          Length = 544

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 6/208 (2%)
 Frame = +1

Query: 19  SKIPNYVIPETYFNNVMTVFNKLDGQ-QASINNDFLTNFVAYINRAYPSKKSEYIIEIWF 195
           +KI  Y+  E  F     +F  L  Q  +SI ND + N     N           IE   
Sbjct: 83  TKIEEYLKLEDLFGEKSNIFTLLINQLYSSIENDIVNNHGNVFNEN---------IENNL 133

Query: 196 YCVCHDINNEDLN-SIMDSEVSQQLIDKVIDK---LNNMKDPSFIFGMKLLSKNWNMIFN 363
             + H++ N D   S ++ +V + + +K+      +N + D +        ++  N I  
Sbjct: 134 NTIIHELKNFDEKLSFLERDVKESIKEKIKQANILINKIYDTNIDIRFFPTAQLPNRI-- 191

Query: 364 NKFCEWFSKLISDKSDVRKCLFTIKDSIHALNRSGKQDIFDSFYLLAICVMSYLNKKSLF 543
           + F +   KLI + +D+       ++S   +  +             +C++   NKK+L 
Sbjct: 192 DSFIDKRDKLIDELNDIIGVKVIKENSTFKVCLNN-----------GMCIIDDYNKKNLM 240

Query: 544 TCSKNVYEHFLK-NYFPDIKRGLLKVDN 624
           T + +  + ++   YF D ++ L K+++
Sbjct: 241 TLTSDTDDKYISVGYFDDNEQRLKKIEH 268
>sp|P03456|HEMA_IATKP Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 565

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 34/134 (25%), Positives = 59/134 (44%)
 Frame = +1

Query: 208 HDINNEDLNSIMDSEVSQQLIDKVIDKLNNMKDPSFIFGMKLLSKNWNMIFNNKFCEWFS 387
           H  N+E      D + +Q+ IDK+ +K+NN+ D         +++ + ++ N++F     
Sbjct: 368 HHSNSEGTGMAADQKSTQEAIDKITNKVNNIVDK--------MNREFEVV-NHEF----- 413

Query: 388 KLISDKSDVRKCLFTIKDSIHALNRSGKQDIFDSFYLLAICVMSYLNKKSLFTCSKNVYE 567
                 S+V K +  I D I          I D +   A  ++   N+K+L     NV  
Sbjct: 414 ------SEVEKRINMINDKI-------DDQIEDLWAYNAELLVLLENQKTLDEHDSNV-- 458

Query: 568 HFLKNYFPDIKRGL 609
              KN F ++KR L
Sbjct: 459 ---KNLFDEVKRRL 469
>sp|Q8K9E8|Y389_BUCAP Hypothetical UPF0169 protein BUsg389
          Length = 243

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
 Frame = +1

Query: 301 KDPSFIFGMKLLS--------KNWNMIFNNKFCEWFSKLISDKSDVRKCLFTIK--DSIH 450
           K+  FIF +  LS        KN+N+I NN   +   K + +K +  K +F +K  ++ H
Sbjct: 4   KNTVFIFMILFLSFAIYSKNLKNYNLILNNYLYQKCRKELKEK-NFYKAIFDLKKIENNH 62

Query: 451 ALNRSGKQDIFDSFYLLAICVMSYLNKKSLFTCSKNVYEHFLKNY 585
           A+N       F++  +    + +Y       T  KN+ E F+K Y
Sbjct: 63  AIN-------FNNDKIKMNLIYAYYKVSDFNTAEKNI-EEFIKKY 99
>sp|P34771|RK23_ASTLO Plastid 50S ribosomal protein L23
          Length = 98

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = +1

Query: 181 IEIWFYCVCHDINNEDLNSIMDSEVSQQLIDKVIDKLNNMKDPSFIFGMKLLSKNWNMIF 360
           + I+   + + +  +  N ++   +    +DK ++KL       +IF +K+ S N   I 
Sbjct: 5   VRIFLPFLKYQVFTDKTNDLLKYNIYVFDVDKKLNKLQIKNIIEYIFNIKIYSIN-TYIK 63

Query: 361 NNKFCEWFSKLISDKSDVRKCLFTIK 438
           NNK+C  F+K+   K++ ++    +K
Sbjct: 64  NNKYC-CFNKIKGLKTNYKRAFIRLK 88
>sp|P40233|CKI1_SCHPO Casein kinase I homolog cki1
          Length = 446

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 193 FYCVCHDINNEDLNSIMDSEVSQQLIDKVIDKLNNMKDPSFIFGMKLLSKNWNMIFNNK 369
           FY   H   N   ++  D +  Q L  KV+++LN  +D +F         +WN++ N K
Sbjct: 253 FYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENF---------DWNLLNNGK 302
>sp|P23643|VPS3_YEAST Vacuolar protein sorting-associated protein VPS3
          Length = 1011

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
 Frame = +1

Query: 313 FIFGMKLLSKNW------NMIFNNKFCEWFSKLISDKSDVRKCLFTIKDSIHALNRSG-- 468
           ++FG K+ S+ W      N++   K      KL +   ++ K L  +K+ +   N++G  
Sbjct: 558 YMFGWKVYSEIWCFHGLINIVERLKSL----KLTNKCENILKMLLMMKNELKKKNKTGLL 613

Query: 469 KQDIFDSFYLLAICVMSY-LNKKSLFTCSKNVYEHFLKNYFPDIKRGLLKVDNKFKLKWT 645
             D  D    + I +    L KK   T      + F +  + +I R +   D+K      
Sbjct: 614 TNDFDDIMKTIDITLFKLRLEKKETITV-----DMFERESYDEIIREINLHDDKLPRIEL 668

Query: 646 MVECLISSAEYEKALSVIKE 705
           ++E      EY KAL++++E
Sbjct: 669 LIEIYKEKGEYLKALNLLRE 688
>sp|P34050|VP43_NPVAC 43 KD PROTEIN
          Length = 363

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 43  PETYFNNVMTVFNKLDGQQASIN--NDFLTNFVAYINRAYPSKKSEYII 183
           P+ YF+    +F KLD    +IN   + LT+F  Y    Y  +K+++ +
Sbjct: 23  PKRYFHTNKVIFEKLDSYATNINRCRELLTDFFDYCLPKYYRRKNKFTL 71
>sp|P36083|YKH5_YEAST Hypothetical 52.1 kDa protein in SMY1-MUD2 intergenic region
          Length = 450

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +1

Query: 52  YFNNVMTVFNKLDGQQASINNDFLTNFVAYINRAYPSKKSEYIIEIWFYCVCHDINNEDL 231
           Y N     FN L        N  +   V Y+N  Y  KKS Y IE +  C+ H   N D+
Sbjct: 49  YGNRRKLTFNFLKHTNMENTNYDVITSVGYLNEKYGLKKSHY-IEKFIKCI-HRKINIDV 106

Query: 232 NSIMDSEVS 258
           + I D+ V+
Sbjct: 107 SKITDAYVN 115
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,181,198
Number of Sequences: 369166
Number of extensions: 1557709
Number of successful extensions: 4202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)