Planaria EST Database


DrC_02592

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02592
         (411 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13435|SF3B2_HUMAN  Splicing factor 3B subunit 2 (Spliceo...    38   0.007
sp|P29974|CNGA1_MOUSE  cGMP-gated cation channel alpha 1 (CN...    35   0.045
sp|Q02752|PHPA_PLACH  Acidic phosphoprotein precursor (50 kD...    34   0.099
sp|Q00194|CNGA1_BOVIN  cGMP-gated cation channel alpha 1 (CN...    33   0.29 
sp|Q8BG95|MYPT2_MOUSE  Protein phosphatase 1 regulatory subu...    33   0.29 
sp|Q12460|SIK1_YEAST  SIK1 protein (Nucleolar protein NOP56)       32   0.38 
sp|Q9JME5|AP3B2_MOUSE  Adapter-related protein complex 3 bet...    32   0.49 
sp|Q8BZX4|SFR12_MOUSE  Splicing factor, arginine/serine-rich...    32   0.49 
sp|Q9U7E0|ATRX_CAEEL  Transcriptional regulator ATRX homolog...    32   0.64 
sp|P29973|CNGA1_HUMAN  cGMP-gated cation channel alpha 1 (CN...    31   0.84 
>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceosome associated protein 145)
           (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145
           kDa subunit)
          Length = 872

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKKP 217
           E+ N  + +++++ D      QS +ETE+D   + +K KN+   K +NR  KKKP
Sbjct: 262 EEMNSQQEEEEMETDARSSLGQSASETEEDTVSVSKKEKNR---KRRNRKKKKKP 313
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 684

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 41  ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           +N  ++  E K K K +    D  ++++ + E  +KK KEK K K ++K K +  ++K
Sbjct: 87  SNKDQEPKEKKKKKKEKKSKADDKNENKKDPEKKKKKEKEKEKKKKEEKTKEKKEEEK 144
>sp|Q02752|PHPA_PLACH Acidic phosphoprotein precursor (50 kDa antigen)
          Length = 441

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           +K NE + + K   ++G+   + +   E  +KK+K KP    + K K    KKK
Sbjct: 352 KKGNENEGEQKGNENEGEQKGKKKKAKEKSKKKVKNKPTMTTKKKKKKEKKKKK 405
>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 690

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 41  ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           +N  ++  E K K K +    D  ++++ + E  +KK K+K K K ++K K++  ++K
Sbjct: 93  SNKEQEPKEKKKKKKEKKSKPDDKNENKKDPEKKKKKEKDKDKKKKEEKGKDKKEEEK 150
>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B (Myosin phosphatase
           targeting subunit 2)
          Length = 484

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKKP 217
           E+N E+ S    + +  D  S+S+TE E D+K   E   N    ++K+RI ++ P
Sbjct: 352 EENKESSSSSSEEEEGEDEVSESETEKEADKK--PEATVNHSNSEIKSRIMEQIP 404
>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
          Length = 504

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 56  KNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKP-KNKLQDKLKNRISKKK 214
           K  E+  K K++ DD +   + + +++ ++K+ KEK  K + +DK + +  KKK
Sbjct: 448 KEKESSKKRKLEDDDEEKKEKKEKKSKKEKKEKKEKKDKKEKKDKKEKKDKKKK 501
>sp|Q9JME5|AP3B2_MOUSE Adapter-related protein complex 3 beta 2 subunit (Beta3B-adaptin)
           (Adaptor protein complex AP-3 beta-2 subunit) (AP-3
           complex beta-2 subunit) (Clathrin assembly protein
           complex 3 beta-2 large chain)
          Length = 1082

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRK-KIKEKPKNKLQDKLKNRISKKK 214
           E  +E++SK    +  G+ +S+S  E ED+ K    E  +++ +D+ K +  KKK
Sbjct: 696 ESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEEDEKKKKTKKKK 750
>sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
           splicing regulatory protein 86) (SRrp86)
          Length = 494

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           +K  +T+ K K +  + +   + + E E DR+K KE+ KNK +D+ K +  +K+
Sbjct: 262 DKRKDTREKVKERVKEKE--REKEREREKDREKDKERGKNKDKDREKEKDHEKE 313

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           ++  + K KD+ +  D +     + E E D+ K +EK ++K  D+ + +  K +
Sbjct: 294 KERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSR 347

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 56  KNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNR 199
           +  + + KDK +  + D   + + + E +R K KEK ++K +++ K+R
Sbjct: 285 EREKDREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDR 332
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
          Length = 1359

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 50  SEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNK 175
           S++  E KSK K +      +S+S  E+E++R K+K+  KNK
Sbjct: 132 SDEEREQKSKKKSKKTKKQTSSESSEESEEER-KVKKSKKNK 172

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 53  EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           E+ +  KS  K +      +   +++ E+DRKK K K K    D+ K   SKKK
Sbjct: 71  EEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKK---VDQKKKEKSKKK 121
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 686

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 41  ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
           +N  ++  E K K K +    D  ++++ + E  +KK K+K K K ++K K++  ++K
Sbjct: 92  SNKDQEPEEKKKKKKEKKSKSDDKNENKNDPEKKKKK-KDKEKKKKEEKSKDKKEEEK 148
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,353,857
Number of Sequences: 369166
Number of extensions: 264710
Number of successful extensions: 2524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2469
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)