Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K16
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceo... 38 0.007
sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CN... 35 0.045
sp|Q02752|PHPA_PLACH Acidic phosphoprotein precursor (50 kD... 34 0.099
sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha 1 (CN... 33 0.29
sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subu... 33 0.29
sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56) 32 0.38
sp|Q9JME5|AP3B2_MOUSE Adapter-related protein complex 3 bet... 32 0.49
sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich... 32 0.49
sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog... 32 0.64
sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CN... 31 0.84
>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceosome associated protein 145)
(SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145
kDa subunit)
Length = 872
Score = 38.1 bits (87), Expect = 0.007
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKKP 217
E+ N + +++++ D QS +ETE+D + +K KN+ K +NR KKKP
Sbjct: 262 EEMNSQQEEEEMETDARSSLGQSASETEEDTVSVSKKEKNR---KRRNRKKKKKP 313
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 684
Score = 35.4 bits (80), Expect = 0.045
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 41 ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
+N ++ E K K K + D ++++ + E +KK KEK K K ++K K + ++K
Sbjct: 87 SNKDQEPKEKKKKKKEKKSKADDKNENKKDPEKKKKKEKEKEKKKKEEKTKEKKEEEK 144
>sp|Q02752|PHPA_PLACH Acidic phosphoprotein precursor (50 kDa antigen)
Length = 441
Score = 34.3 bits (77), Expect = 0.099
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
+K NE + + K ++G+ + + E +KK+K KP + K K KKK
Sbjct: 352 KKGNENEGEQKGNENEGEQKGKKKKAKEKSKKKVKNKPTMTTKKKKKKEKKKKK 405
>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 690
Score = 32.7 bits (73), Expect = 0.29
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 41 ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
+N ++ E K K K + D ++++ + E +KK K+K K K ++K K++ ++K
Sbjct: 93 SNKEQEPKEKKKKKKEKKSKPDDKNENKKDPEKKKKKEKDKDKKKKEEKGKDKKEEEK 150
>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B (Myosin phosphatase
targeting subunit 2)
Length = 484
Score = 32.7 bits (73), Expect = 0.29
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKKP 217
E+N E+ S + + D S+S+TE E D+K E N ++K+RI ++ P
Sbjct: 352 EENKESSSSSSEEEEGEDEVSESETEKEADKK--PEATVNHSNSEIKSRIMEQIP 404
>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
Length = 504
Score = 32.3 bits (72), Expect = 0.38
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 KNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKP-KNKLQDKLKNRISKKK 214
K E+ K K++ DD + + + +++ ++K+ KEK K + +DK + + KKK
Sbjct: 448 KEKESSKKRKLEDDDEEKKEKKEKKSKKEKKEKKEKKDKKEKKDKKEKKDKKKK 501
>sp|Q9JME5|AP3B2_MOUSE Adapter-related protein complex 3 beta 2 subunit (Beta3B-adaptin)
(Adaptor protein complex AP-3 beta-2 subunit) (AP-3
complex beta-2 subunit) (Clathrin assembly protein
complex 3 beta-2 large chain)
Length = 1082
Score = 32.0 bits (71), Expect = 0.49
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRK-KIKEKPKNKLQDKLKNRISKKK 214
E +E++SK + G+ +S+S E ED+ K E +++ +D+ K + KKK
Sbjct: 696 ESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEEDEKKKKTKKKK 750
>sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86)
Length = 494
Score = 32.0 bits (71), Expect = 0.49
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
+K +T+ K K + + + + + E E DR+K KE+ KNK +D+ K + +K+
Sbjct: 262 DKRKDTREKVKERVKEKE--REKEREREKDREKDKERGKNKDKDREKEKDHEKE 313
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
++ + K KD+ + D + + E E D+ K +EK ++K D+ + + K +
Sbjct: 294 KERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSR 347
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 56 KNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNR 199
+ + + KDK + + D + + + E +R K KEK ++K +++ K+R
Sbjct: 285 EREKDREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDR 332
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
Length = 1359
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 50 SEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNK 175
S++ E KSK K + +S+S E+E++R K+K+ KNK
Sbjct: 132 SDEEREQKSKKKSKKTKKQTSSESSEESEEER-KVKKSKKNK 172
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 53 EKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
E+ + KS K + + +++ E+DRKK K K K D+ K SKKK
Sbjct: 71 EEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKK---VDQKKKEKSKKK 121
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 686
Score = 31.2 bits (69), Expect = 0.84
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 41 ANLSEKNNETKSKDKIQADDGDVTSQSQTETEDDRKKIKEKPKNKLQDKLKNRISKKK 214
+N ++ E K K K + D ++++ + E +KK K+K K K ++K K++ ++K
Sbjct: 92 SNKDQEPEEKKKKKKEKKSKSDDKNENKNDPEKKKKK-KDKEKKKKEEKSKDKKEEEK 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,353,857
Number of Sequences: 369166
Number of extensions: 264710
Number of successful extensions: 2524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2469
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)