Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02591
(171 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15397|ROLT_AGRRH Protein rolB(TR) 28 5.0
sp|Q5WN23|GCP2_CAEBR Glutamate carboxypeptidase II homolog 28 8.5
>sp|P15397|ROLT_AGRRH Protein rolB(TR)
Length = 274
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 45 SQSLRKKAVRFQRVIVESKMFLAELHHPANHTRHLNQKIIT 167
+QS R + +RFQ+ E + + E +P N + +N +I+T
Sbjct: 51 NQSFRGEIMRFQKAFAERVLNMVEARYPVNQLK-INAEILT 90
>sp|Q5WN23|GCP2_CAEBR Glutamate carboxypeptidase II homolog
Length = 770
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 15 RIQIALLSPESQSLRKKAVRFQRVIVESKMFLAELHHPANHTRHLNQKIIT 167
R Q ALLS SQ L + +FQ + + ++ + A H +N+++I+
Sbjct: 640 RTQYALLSKSSQDLLVMSKKFQETMQFTFHSFSQNPYDAKHVNAVNERLIS 690
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,747,383
Number of Sequences: 369166
Number of extensions: 135816
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 68,354,980
effective HSP length: 29
effective length of database: 62,997,665
effective search space used: 1700936955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)