Planaria EST Database


DrC_02591

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02591
         (171 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15397|ROLT_AGRRH  Protein rolB(TR)                             28   5.0  
sp|Q5WN23|GCP2_CAEBR  Glutamate carboxypeptidase II homolog        28   8.5  
>sp|P15397|ROLT_AGRRH Protein rolB(TR)
          Length = 274

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 45  SQSLRKKAVRFQRVIVESKMFLAELHHPANHTRHLNQKIIT 167
           +QS R + +RFQ+   E  + + E  +P N  + +N +I+T
Sbjct: 51  NQSFRGEIMRFQKAFAERVLNMVEARYPVNQLK-INAEILT 90
>sp|Q5WN23|GCP2_CAEBR Glutamate carboxypeptidase II homolog
          Length = 770

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 15  RIQIALLSPESQSLRKKAVRFQRVIVESKMFLAELHHPANHTRHLNQKIIT 167
           R Q ALLS  SQ L   + +FQ  +  +    ++  + A H   +N+++I+
Sbjct: 640 RTQYALLSKSSQDLLVMSKKFQETMQFTFHSFSQNPYDAKHVNAVNERLIS 690
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,747,383
Number of Sequences: 369166
Number of extensions: 135816
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 68,354,980
effective HSP length: 29
effective length of database: 62,997,665
effective search space used: 1700936955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)