Planaria EST Database


DrC_02589

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02589
         (534 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31393|PLST_CARAU  Plasticin                                    31   1.7  
sp|P08617|POLG_HAVHM  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|Q8WXA9|SFR12_HUMAN  Splicing factor, arginine/serine-rich...    30   3.7  
sp|P06441|POLG_HAVLA  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|P13901|POLG_HAVMB  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|P26581|POLG_HAV43  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|P26580|POLG_HAV24  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|P26582|POLG_HAV18  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|P14553|POLG_HPAVS  Genome polyprotein [Contains: Coat pro...    30   3.7  
sp|Q5B0I1|CWC25_EMENI  Pre-mRNA splicing factor cwc25              30   4.8  
>sp|P31393|PLST_CARAU Plasticin
          Length = 453

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 58  QNNSRHNITLTRKSIDESKDLSDWELENGIQIYEDNGEFVLNAFDTIIKSEEKDVQNSSP 237
           +  + +N+TL RK +D++  L+  ELE  I+   D  EF+    D  I+  +  VQ+   
Sbjct: 173 RQEAENNLTLFRKDVDDAT-LARLELERKIESLMDEIEFLKKMHDEEIQDVQVSVQSQQM 231

Query: 238 K 240
           K
Sbjct: 232 K 232
>sp|P08617|POLG_HAVHM Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2227

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
           splicing regulatory protein 86) (SRrp86) (Splicing
           regulatory protein 508) (SRrp508)
          Length = 508

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 313 SERLKGHKHKRRKQSHRSSLVVSDDDSTIRNRKSNQSPKVHSYRRCDREKPPER 474
           S R +    +RR++  RSS        TI+ RKS++SP   S  + D+++  ER
Sbjct: 371 SRRSRSSSRERRRRRSRSSSRSPRTSKTIK-RKSSRSPSPRSRNKKDKKREKER 423
>sp|P06441|POLG_HAVLA Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2227

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P13901|POLG_HAVMB Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2227

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPLRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26581|POLG_HAV43 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2226

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26580|POLG_HAV24 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2226

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26582|POLG_HAV18 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2226

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P14553|POLG_HPAVS Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Probable protein P3A; Probable protein
            P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)]
          Length = 2230

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 293  DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
            DE+W D C L  GC   L++    E    FSS  I+ ++ +   SP + Y+
Sbjct: 1293 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1343
>sp|Q5B0I1|CWC25_EMENI Pre-mRNA splicing factor cwc25
          Length = 415

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 325 KGHKHKRRKQSHRSSLVVSDDDSTIRNRKSNQSPKVHSYRRCDREKPPER 474
           + H+H+RR +S   S  V  DD   R+R+ ++  + H  R  +RE   ER
Sbjct: 194 RSHRHRRRSRSRSRSPRVEKDDRRHRDREHDR--RSHRDRDGERENRVER 241
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,610,866
Number of Sequences: 369166
Number of extensions: 1044454
Number of successful extensions: 3378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3375
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)