Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K11
(534 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31393|PLST_CARAU Plasticin 31 1.7
sp|P08617|POLG_HAVHM Genome polyprotein [Contains: Coat pro... 30 3.7
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich... 30 3.7
sp|P06441|POLG_HAVLA Genome polyprotein [Contains: Coat pro... 30 3.7
sp|P13901|POLG_HAVMB Genome polyprotein [Contains: Coat pro... 30 3.7
sp|P26581|POLG_HAV43 Genome polyprotein [Contains: Coat pro... 30 3.7
sp|P26580|POLG_HAV24 Genome polyprotein [Contains: Coat pro... 30 3.7
sp|P26582|POLG_HAV18 Genome polyprotein [Contains: Coat pro... 30 3.7
sp|P14553|POLG_HPAVS Genome polyprotein [Contains: Coat pro... 30 3.7
sp|Q5B0I1|CWC25_EMENI Pre-mRNA splicing factor cwc25 30 4.8
>sp|P31393|PLST_CARAU Plasticin
Length = 453
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 58 QNNSRHNITLTRKSIDESKDLSDWELENGIQIYEDNGEFVLNAFDTIIKSEEKDVQNSSP 237
+ + +N+TL RK +D++ L+ ELE I+ D EF+ D I+ + VQ+
Sbjct: 173 RQEAENNLTLFRKDVDDAT-LARLELERKIESLMDEIEFLKKMHDEEIQDVQVSVQSQQM 231
Query: 238 K 240
K
Sbjct: 232 K 232
>sp|P08617|POLG_HAVHM Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2227
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (Splicing
regulatory protein 508) (SRrp508)
Length = 508
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 313 SERLKGHKHKRRKQSHRSSLVVSDDDSTIRNRKSNQSPKVHSYRRCDREKPPER 474
S R + +RR++ RSS TI+ RKS++SP S + D+++ ER
Sbjct: 371 SRRSRSSSRERRRRRSRSSSRSPRTSKTIK-RKSSRSPSPRSRNKKDKKREKER 423
>sp|P06441|POLG_HAVLA Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2227
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P13901|POLG_HAVMB Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2227
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPLRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26581|POLG_HAV43 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2226
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26580|POLG_HAV24 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2226
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P26582|POLG_HAV18 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2226
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1289 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1339
>sp|P14553|POLG_HPAVS Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Probable protein P3A; Probable protein
P3B; Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase (P3D)]
Length = 2230
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 293 DEEWDDLCFLFFGC---LSILFGLEFCTSFSSDLIMVSNAFKTNSPLSSYI 150
DE+W D C L GC L++ E FSS I+ ++ + SP + Y+
Sbjct: 1293 DEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYV 1343
>sp|Q5B0I1|CWC25_EMENI Pre-mRNA splicing factor cwc25
Length = 415
Score = 29.6 bits (65), Expect = 4.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 325 KGHKHKRRKQSHRSSLVVSDDDSTIRNRKSNQSPKVHSYRRCDREKPPER 474
+ H+H+RR +S S V DD R+R+ ++ + H R +RE ER
Sbjct: 194 RSHRHRRRSRSRSRSPRVEKDDRRHRDREHDR--RSHRDRDGERENRVER 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,610,866
Number of Sequences: 369166
Number of extensions: 1044454
Number of successful extensions: 3378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3375
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)