Planaria EST Database


DrC_02586

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02586
         (656 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40427|EXD_DROME  Homeobox protein extradenticle               137   3e-32
sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcription fact...   136   4e-32
sp|O35984|PBX2_MOUSE  Pre-B-cell leukemia transcription fact...   136   4e-32
sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transcription fact...   135   9e-32
sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcription fact...   135   1e-31
sp|O35317|PBX3_MOUSE  Pre-B-cell leukemia transcription fact...   135   1e-31
sp|P41779|HM20_CAEEL  Homeobox protein ceh-20                     129   9e-30
sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transcription fact...   124   2e-28
sp|Q99NE9|PBX4_MOUSE  Pre-B-cell leukemia transcription fact...   123   4e-28
sp|Q19503|HM40_CAEEL  Homeobox protein ceh-40                      98   2e-20
>sp|P40427|EXD_DROME Homeobox protein extradenticle
          Length = 376

 Score =  137 bits (344), Expect = 3e-32
 Identities = 64/70 (91%), Positives = 69/70 (98%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+A+EILNEYFYSHL+NPYPSEEAK+ELA+KCGITVSQVSNWFGNKRIRYKKNI
Sbjct: 241 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI 300

Query: 183 VKAQEEANLY 212
            KAQEEANLY
Sbjct: 301 GKAQEEANLY 310
>sp|P40425|PBX2_HUMAN Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score =  136 bits (343), Expect = 4e-32
 Identities = 70/106 (66%), Positives = 76/106 (71%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATE+LNEYFYSHL+NPYPSEEAK+ELAKKCGITVSQVSNWFGNKRIRYKKNI
Sbjct: 247 KRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 306

Query: 183 VKAQEEANLYXXXXXXXXXXXXXXXXXXGQMSASCPTVSTSMSYGG 320
            K QEEAN+Y                  G    S PT  +S   GG
Sbjct: 307 GKFQEEANIY-------AVKTAVSVTQGGHSRTSSPTPPSSAGSGG 345
>sp|O35984|PBX2_MOUSE Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2)
          Length = 430

 Score =  136 bits (343), Expect = 4e-32
 Identities = 70/106 (66%), Positives = 76/106 (71%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATE+LNEYFYSHL+NPYPSEEAK+ELAKKCGITVSQVSNWFGNKRIRYKKNI
Sbjct: 247 KRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 306

Query: 183 VKAQEEANLYXXXXXXXXXXXXXXXXXXGQMSASCPTVSTSMSYGG 320
            K QEEAN+Y                  G    S PT  +S   GG
Sbjct: 307 GKFQEEANIY-------AVKTAVSVAQGGHSRTSSPTPPSSAGSGG 345
>sp|P41778|PBX1_MOUSE Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1)
 sp|P40424|PBX1_HUMAN Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score =  135 bits (340), Expect = 9e-32
 Identities = 63/70 (90%), Positives = 68/70 (97%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNF+K+ATEILNEYFYSHL+NPYPSEEAK+ELAKKCGITVSQVSNWFGNKRIRYKKNI
Sbjct: 236 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 295

Query: 183 VKAQEEANLY 212
            K QEEAN+Y
Sbjct: 296 GKFQEEANIY 305
>sp|P40426|PBX3_HUMAN Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3)
          Length = 434

 Score =  135 bits (339), Expect = 1e-31
 Identities = 64/70 (91%), Positives = 67/70 (95%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATEILNEYFYSHL+NPYPSEEAK+ELAKKC ITVSQVSNWFGNKRIRYKKNI
Sbjct: 238 KRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNI 297

Query: 183 VKAQEEANLY 212
            K QEEANLY
Sbjct: 298 GKFQEEANLY 307
>sp|O35317|PBX3_MOUSE Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3)
          Length = 434

 Score =  135 bits (339), Expect = 1e-31
 Identities = 64/70 (91%), Positives = 67/70 (95%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATEILNEYFYSHL+NPYPSEEAK+ELAKKC ITVSQVSNWFGNKRIRYKKNI
Sbjct: 238 KRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNI 297

Query: 183 VKAQEEANLY 212
            K QEEANLY
Sbjct: 298 GKFQEEANLY 307
>sp|P41779|HM20_CAEEL Homeobox protein ceh-20
          Length = 338

 Score =  129 bits (323), Expect = 9e-30
 Identities = 57/70 (81%), Positives = 67/70 (95%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATE+LNEYFY HL+NPYPSEEAK++LA++C ITVSQVSNWFGNKRIRYKKN+
Sbjct: 191 KRRNFSKQATEVLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQVSNWFGNKRIRYKKNM 250

Query: 183 VKAQEEANLY 212
            KAQEEA++Y
Sbjct: 251 AKAQEEASMY 260
>sp|Q9BYU1|PBX4_HUMAN Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4)
          Length = 330

 Score =  124 bits (312), Expect = 2e-28
 Identities = 57/70 (81%), Positives = 65/70 (92%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+ATE+LNEYFYSHL NPYPSEEAK+ELA+K G+T+SQVSNWFGNKRIRYKKN+
Sbjct: 169 KRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKKNM 228

Query: 183 VKAQEEANLY 212
            K QEEA +Y
Sbjct: 229 GKFQEEATIY 238
>sp|Q99NE9|PBX4_MOUSE Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4)
          Length = 378

 Score =  123 bits (309), Expect = 4e-28
 Identities = 57/70 (81%), Positives = 64/70 (91%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK+AT++LNEYFYSHL+NPYPSEE K+ELA+K GITVSQVSNWFGNKRIRYKKN 
Sbjct: 218 KRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRYKKNT 277

Query: 183 VKAQEEANLY 212
            K QEEA +Y
Sbjct: 278 GKFQEEATMY 287
>sp|Q19503|HM40_CAEEL Homeobox protein ceh-40
          Length = 329

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +3

Query: 3   KRRNFSKEATEILNEYFYSHLANPYPSEEAKDELAKKCGITVSQVSNWFGNKRIRYKKNI 182
           KRRNFSK +TEILNEYF +++ +PYPSEE K  LA +C I+V+QVSNWFGNKRIRYKK +
Sbjct: 190 KRRNFSKTSTEILNEYFLANINHPYPSEEVKQALAMQCNISVAQVSNWFGNKRIRYKKTM 249

Query: 183 VKAQEE 200
            K ++E
Sbjct: 250 AKNEDE 255
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,763,188
Number of Sequences: 369166
Number of extensions: 1135985
Number of successful extensions: 3888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3887
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)