Planaria EST Database


DrC_02584

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02584
         (223 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53814|SMOO_HUMAN  Smoothelin                                   35   0.053
sp|P75608|Y085_MYCPN  Hypothetical protein MPN085 (R02_orf440)     30   2.2  
sp|Q6A068|CDC5L_MOUSE  Cell division cycle 5-related protein...    29   2.9  
sp|Q99459|CDC5L_HUMAN  Cell division cycle 5-like protein (C...    29   2.9  
sp|O08837|CDC5L_RAT  Cell division cycle 5-related protein (...    29   2.9  
sp|Q00195|CNGA2_RAT  Cyclic-nucleotide-gated olfactory chann...    28   5.0  
sp|Q9KQ62|FLAG_VIBCH  Protein flaG                                 28   5.0  
sp|Q9VJE5|CL190_DROME  Restin homolog (Cytoplasmic linker pr...    28   5.0  
sp|P34648|YOT2_CAEEL  Hypothetical protein ZK632.2 in chromo...    28   6.5  
sp|Q03041|CNGA2_BOVIN  Cyclic-nucleotide-gated olfactory cha...    28   6.5  
>sp|P53814|SMOO_HUMAN Smoothelin
          Length = 917

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +1

Query: 22  DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRE 171
           ++ TI+DE +L +M+ +++D   RK IRA  +ELR+    Q   R K+RE
Sbjct: 582 ELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRKRDQ---RDKERE 628
>sp|P75608|Y085_MYCPN Hypothetical protein MPN085 (R02_orf440)
          Length = 440

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -3

Query: 101 ISFLKFISLVLATISANKSSSSIVEISIGFDIV 3
           I F   ISL+LATI +   S +IV+ISI F ++
Sbjct: 396 IIFFSIISLILATIGSVFISFAIVQISIPFYVI 428
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein (Cdc5-like protein)
          Length = 802

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
           +PID+   D+ ++L+E  A+ ++   +K  R AR+K+L E  A ++A  QK+RE     +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196

Query: 190 DSVKTR 207
           +  K R
Sbjct: 197 EIQKKR 202
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein (Cdc5-like protein) (Pombe
           cdc5-related protein)
          Length = 802

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
           +PID+   D+ ++L+E  A+ ++   +K  R AR+K+L E  A ++A  QK+RE     +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196

Query: 190 DSVKTR 207
           +  K R
Sbjct: 197 EIQKKR 202
>sp|O08837|CDC5L_RAT Cell division cycle 5-related protein (Cdc5-like protein) (Pombe
           Cdc5-related protein)
          Length = 802

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
           +PID+   D+ ++L+E  A+ ++   +K  R AR+K+L E  A ++A  QK+RE     +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196

Query: 190 DSVKTR 207
           +  K R
Sbjct: 197 EIQKKR 202
>sp|Q00195|CNGA2_RAT Cyclic-nucleotide-gated olfactory channel (Cyclic-nucleotide-gated
           cation channel 2) (CNG channel 2) (CNG2) (CNG-2) (OCNC1)
          Length = 664

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
 Frame = +1

Query: 22  DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKEL---------REIAAAQVAERQKQREN 174
           D+  +  +DL   M A T   + +K +  R +E+          E+AA+   + Q++ E 
Sbjct: 549 DLFCLSKDDL---MEAVTEYPDAKKVLEERGREILMKEGLLDENEVAASMEVDVQEKLEQ 605

Query: 175 LGTNLDSVKTR 207
           L TN+D++ TR
Sbjct: 606 LETNMDTLYTR 616
>sp|Q9KQ62|FLAG_VIBCH Protein flaG
          Length = 153

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 13  NPIDISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRE 171
           N   +S   D         K S+ +  +++RARQ+E  E A AQ  +RQ+  E
Sbjct: 27  NAKSVSLSGDNSRSVSRTDKLSE-HFSEQVRARQQESAETAMAQAKQRQRLNE 78
>sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker protein 190) (Microtubule
           binding protein 190) (d-CLIP-190)
          Length = 1690

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 40  DEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRENL 177
           D+  L E +AK     L++++  +QKE+    A Q+ E Q+ REN+
Sbjct: 482 DDGALQEEIAK-----LQEKMTIQQKEVESRIAEQLEEEQRLRENV 522
>sp|P34648|YOT2_CAEEL Hypothetical protein ZK632.2 in chromosome III
          Length = 710

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 40  DEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAE---RQKQRENLGTNLD 192
           +ED   E     ++M LRK  +  + +LR  AA ++ +   R+K+ E  G  +D
Sbjct: 194 EEDSEPEWDCSPTEMKLRKHKKELEAKLRAAAAQEMIDDEKREKEEEGCGWGMD 247
>sp|Q03041|CNGA2_BOVIN Cyclic-nucleotide-gated olfactory channel (Cyclic-nucleotide-gated
           cation channel 2) (CNG channel 2) (CNG-2) (CNG2)
          Length = 663

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
 Frame = +1

Query: 22  DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELRE-------IAAAQVAERQKQRENLG 180
           D+  +  +DL+ E V +  D     E R R+  ++E       +AA+   + Q++ E L 
Sbjct: 547 DLFCLSKDDLM-EAVTEYPDAKRVLEERGREILMKEGLLDENEVAASMEVDVQEKLEQLE 605

Query: 181 TNLDSVKTR 207
           TN+D++ TR
Sbjct: 606 TNMDTLYTR 614
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.311    0.124    0.312 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,912,158
Number of Sequences: 369166
Number of extensions: 280222
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)