Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H19
(223 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53814|SMOO_HUMAN Smoothelin 35 0.053
sp|P75608|Y085_MYCPN Hypothetical protein MPN085 (R02_orf440) 30 2.2
sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein... 29 2.9
sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein (C... 29 2.9
sp|O08837|CDC5L_RAT Cell division cycle 5-related protein (... 29 2.9
sp|Q00195|CNGA2_RAT Cyclic-nucleotide-gated olfactory chann... 28 5.0
sp|Q9KQ62|FLAG_VIBCH Protein flaG 28 5.0
sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker pr... 28 5.0
sp|P34648|YOT2_CAEEL Hypothetical protein ZK632.2 in chromo... 28 6.5
sp|Q03041|CNGA2_BOVIN Cyclic-nucleotide-gated olfactory cha... 28 6.5
>sp|P53814|SMOO_HUMAN Smoothelin
Length = 917
Score = 35.0 bits (79), Expect = 0.053
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 22 DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRE 171
++ TI+DE +L +M+ +++D RK IRA +ELR+ Q R K+RE
Sbjct: 582 ELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRKRDQ---RDKERE 628
>sp|P75608|Y085_MYCPN Hypothetical protein MPN085 (R02_orf440)
Length = 440
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 101 ISFLKFISLVLATISANKSSSSIVEISIGFDIV 3
I F ISL+LATI + S +IV+ISI F ++
Sbjct: 396 IIFFSIISLILATIGSVFISFAIVQISIPFYVI 428
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein (Cdc5-like protein)
Length = 802
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
+PID+ D+ ++L+E A+ ++ +K R AR+K+L E A ++A QK+RE +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196
Query: 190 DSVKTR 207
+ K R
Sbjct: 197 EIQKKR 202
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein (Cdc5-like protein) (Pombe
cdc5-related protein)
Length = 802
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
+PID+ D+ ++L+E A+ ++ +K R AR+K+L E A ++A QK+RE +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196
Query: 190 DSVKTR 207
+ K R
Sbjct: 197 EIQKKR 202
>sp|O08837|CDC5L_RAT Cell division cycle 5-related protein (Cdc5-like protein) (Pombe
Cdc5-related protein)
Length = 802
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 NPIDISTIDDEDLLAEMVAKTSDMNLRKEIR-ARQKELREIAAAQVAERQKQRENLGTNL 189
+PID+ D+ ++L+E A+ ++ +K R AR+K+L E A ++A QK+RE +
Sbjct: 140 DPIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEE--ARRLAALQKRRELRAAGI 196
Query: 190 DSVKTR 207
+ K R
Sbjct: 197 EIQKKR 202
>sp|Q00195|CNGA2_RAT Cyclic-nucleotide-gated olfactory channel (Cyclic-nucleotide-gated
cation channel 2) (CNG channel 2) (CNG2) (CNG-2) (OCNC1)
Length = 664
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +1
Query: 22 DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKEL---------REIAAAQVAERQKQREN 174
D+ + +DL M A T + +K + R +E+ E+AA+ + Q++ E
Sbjct: 549 DLFCLSKDDL---MEAVTEYPDAKKVLEERGREILMKEGLLDENEVAASMEVDVQEKLEQ 605
Query: 175 LGTNLDSVKTR 207
L TN+D++ TR
Sbjct: 606 LETNMDTLYTR 616
>sp|Q9KQ62|FLAG_VIBCH Protein flaG
Length = 153
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 13 NPIDISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRE 171
N +S D K S+ + +++RARQ+E E A AQ +RQ+ E
Sbjct: 27 NAKSVSLSGDNSRSVSRTDKLSE-HFSEQVRARQQESAETAMAQAKQRQRLNE 78
>sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker protein 190) (Microtubule
binding protein 190) (d-CLIP-190)
Length = 1690
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 40 DEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAERQKQRENL 177
D+ L E +AK L++++ +QKE+ A Q+ E Q+ REN+
Sbjct: 482 DDGALQEEIAK-----LQEKMTIQQKEVESRIAEQLEEEQRLRENV 522
>sp|P34648|YOT2_CAEEL Hypothetical protein ZK632.2 in chromosome III
Length = 710
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 40 DEDLLAEMVAKTSDMNLRKEIRARQKELREIAAAQVAE---RQKQRENLGTNLD 192
+ED E ++M LRK + + +LR AA ++ + R+K+ E G +D
Sbjct: 194 EEDSEPEWDCSPTEMKLRKHKKELEAKLRAAAAQEMIDDEKREKEEEGCGWGMD 247
>sp|Q03041|CNGA2_BOVIN Cyclic-nucleotide-gated olfactory channel (Cyclic-nucleotide-gated
cation channel 2) (CNG channel 2) (CNG-2) (CNG2)
Length = 663
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = +1
Query: 22 DISTIDDEDLLAEMVAKTSDMNLRKEIRARQKELRE-------IAAAQVAERQKQRENLG 180
D+ + +DL+ E V + D E R R+ ++E +AA+ + Q++ E L
Sbjct: 547 DLFCLSKDDLM-EAVTEYPDAKRVLEERGREILMKEGLLDENEVAASMEVDVQEKLEQLE 605
Query: 181 TNLDSVKTR 207
TN+D++ TR
Sbjct: 606 TNMDTLYTR 614
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.311 0.124 0.312
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,912,158
Number of Sequences: 369166
Number of extensions: 280222
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)