Planaria EST Database


DrC_02580

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02580
         (491 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91YY4|ATPF2_MOUSE  ATP synthase mitochondrial F1 complex...   119   5e-27
sp|Q8N5M1|ATPF2_HUMAN  ATP synthase mitochondrial F1 complex...   117   2e-26
sp|Q9UT16|ATP12_SCHPO  Protein atp12, mitochondrial precursor      63   4e-10
sp|P22135|ATP12_YEAST  ATP12 protein, mitochondrial precursor      35   0.073
sp|Q9GQN0|RP16_DROME  Ran-binding protein 16                       32   1.1  
sp|P48834|ZP4_FELCA  Zona pellucida sperm-binding protein 4 ...    32   1.1  
sp|P46566|SRG9_CAEEL  Serpentine receptor class gamma-9 (Pro...    31   1.8  
sp|P32833|ORC2_YEAST  Origin recognition complex subunit 2 (...    30   3.1  
sp|Q9Y7R3|CND2_SCHPO  Condensin complex subunit 2 (p105) (Ba...    30   4.0  
sp|Q59905|DEXB_STREQ  Glucan 1,6-alpha-glucosidase (Dextran ...    29   5.2  
>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2,
           mitochondrial precursor
          Length = 289

 Score =  119 bits (297), Expect = 5e-27
 Identities = 57/154 (37%), Positives = 90/154 (58%)
 Frame = +1

Query: 7   MEYLDSDTICFRCPDVEDLYQMQCAYWNPILDFIGNRYHVTPIVTDNIVLPKLSHDCRNV 186
           +++LD+DTIC+R  + E L ++Q   W+P++++   RY +    + +I+ P +    R V
Sbjct: 132 VKFLDTDTICYRVEEPETLVELQKNEWDPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREV 191

Query: 187 FERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQVNKWGNV 366
              HL   NMW L G +  +  LKS+ LTL L D  L+VE+AV LSRLE EYQ+ KWGN+
Sbjct: 192 LTSHLSSYNMWALQGIEFVVAQLKSMLLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNI 251

Query: 367 PWYHEVDQAEMEIRVASSAFLIYCSQNAQYVVYK 468
            W H+ +  E+  R A+    ++    +  V +K
Sbjct: 252 EWAHDYELQELRARTAAGTLFVHLCSESSTVKHK 285
>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2,
           mitochondrial precursor (ATP12 homolog)
          Length = 289

 Score =  117 bits (292), Expect = 2e-26
 Identities = 59/154 (38%), Positives = 88/154 (57%)
 Frame = +1

Query: 7   MEYLDSDTICFRCPDVEDLYQMQCAYWNPILDFIGNRYHVTPIVTDNIVLPKLSHDCRNV 186
           +++LD+DTIC+R  + E L ++Q   W+PI+++   RY V    + +I+ P +    R V
Sbjct: 132 VKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREV 191

Query: 187 FERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQVNKWGNV 366
              HL   N W L G +     LKS+ LTL L D  L+VE+AV LSRLE EYQ+ KWGN+
Sbjct: 192 LVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNI 251

Query: 367 PWYHEVDQAEMEIRVASSAFLIYCSQNAQYVVYK 468
            W H+ +  E+  R A+    I+    +  V +K
Sbjct: 252 EWAHDYELQELRARTAAGTLFIHLCSESTTVKHK 285
>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial precursor
          Length = 287

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
 Frame = +1

Query: 4   IMEYLDSDTICFRCPDVE---DLYQMQCAYWNPILDFIGNRYHVTPIVTDN---IVLPKL 165
           ++ +LD+DTI    P+ E    L + Q   W P+ +   N+  V     D    I+  K 
Sbjct: 128 LIRFLDTDTILIYSPETEYEGKLLEEQKENWWPLKETFENKLGVQLSYLDGDAGIIAHKQ 187

Query: 166 SHDCRNVFERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQ 345
           + +        L   N W L  ++  +   KS  ++  +    L+ E+A  L+ LE +YQ
Sbjct: 188 TQETHERIRNWLSSLNSWQLAAFERSVSCCKSFIVSFMILKGYLNSEKAAALTNLELQYQ 247

Query: 346 VNKWGNVPWYHEVDQAEMEIRVASSAFLIYCSQN 447
            N+WG++    E D  +++ ++ASSA L  C ++
Sbjct: 248 TNRWGSL----EDDNEDLKNKLASSAILSRCIED 277
>sp|P22135|ATP12_YEAST ATP12 protein, mitochondrial precursor
          Length = 325

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
 Frame = +1

Query: 4   IMEYLDSDTICFRCPDVE---DLYQMQCAYWNPIL----DFIGN-------RYHVTPIVT 141
           ++ YLD+DT+    P  E    L   Q   + PI+    +F+ N       R  +     
Sbjct: 155 LLRYLDTDTLLVFSPMNEFEGRLRNAQNELYIPIIKGMEEFLRNFSSESNIRLQILDADI 214

Query: 142 DNIVLPKLSHDCRNVFERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHI--------- 294
             +   + S   +N  ++++   + W L   +  + T KS    + L ++          
Sbjct: 215 HGLRGNQQSDIVKNAAKKYMSSLSPWDLAILEKTVLTTKSFICGVLLLENKKDTANLIPA 274

Query: 295 --LSVEEAVKLSRLESEYQVNKWGNVPWYHEVDQAEMEIRVASSAFLIY 435
               ++  V+ + LE+ +QV KWG V   H+VD+ ++  ++ ++A   +
Sbjct: 275 LKTDMDNIVRAATLETIFQVEKWGEVEDTHDVDKRDIRRKIHTAAIAAF 323
>sp|Q9GQN0|RP16_DROME Ran-binding protein 16
          Length = 1098

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +1

Query: 193 RHLLCNNMWGLIGYQHCIETLKSVYLTL-ALTDHILSVEEAVKLSRLESEYQVNKWGNVP 369
           R  L NN        H +E +K +  TL  L+D     E    L+RL+S YQ+ +   VP
Sbjct: 287 RRSLFNNSERTKFLTHLVEGVKDILTTLHGLSDPDNYHEFCRLLARLKSNYQLGELIAVP 346

Query: 370 WYHEVDQAEMEIRVASSAFLIYCSQNAQYVV 462
            Y E  Q   +  V S    ++   +  Y++
Sbjct: 347 CYPEAIQLIAKFTVESLHLWLFAPNSVHYLL 377
>sp|P48834|ZP4_FELCA Zona pellucida sperm-binding protein 4 precursor (Zona pellucida
           sperm-binding protein B)
          Length = 570

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 358 PICSPGIQIPNDSALQPLPRIKYDRLKLMSNKPISKSQCNAGIQ*DPTCCYIKDAFQKHF 179
           P+ +  ++ PN      +P  K+DRL   S+ PI++  CN        CCY  +A   ++
Sbjct: 165 PLQNVALEAPNADLCDSVP--KWDRLPCASS-PITQGDCNK-----LGCCYKSEANSCYY 216

Query: 178 GNHV 167
           GN V
Sbjct: 217 GNTV 220
>sp|P46566|SRG9_CAEEL Serpentine receptor class gamma-9 (Protein srg-9)
          Length = 336

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 IVLPKLSHDCRNVFERH-LLCNNMWGLIGYQHCIETLKSVYLTL 276
           + +P+L       F+ H LL N  + L+ Y HC + L  ++LTL
Sbjct: 89  VYVPQLCIPASKFFQSHSLLMNIYYPLLNYLHCAQPLIQIFLTL 132
>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (Origin recognition complex
           protein 71 kDa subunit)
          Length = 620

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
 Frame = -2

Query: 304 PRIKYDRL----KLMSNKPISKSQCNAGIQ*DPTCCYIKDAFQ----------------K 185
           P+I Y +L    +L  NKP++   C      +P+C Y +D F+                K
Sbjct: 336 PKIAYSQLAYENELQQNKPVNSIPCLILNGYNPSCNY-RDVFKEITDLLVPAELTRSETK 394

Query: 184 HFGNHVIISVKQ 149
           ++GNHVI+ +++
Sbjct: 395 YWGNHVILQIQK 406
>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 (p105) (Barren homolog) (CAPH homolog)
          Length = 742

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 153 NNVISYNWSNMIPIPNEI*DWIPISTLHLIQIFNIWTSKTNCIAIQIFHN 4
           NN   +N S+ +P+ +   +WI ++T + I   N W    N   I  FH+
Sbjct: 54  NNSSPFNSSHQVPVLSNFEEWIKLATDNKINSTNTW----NFALIDYFHD 99
>sp|Q59905|DEXB_STREQ Glucan 1,6-alpha-glucosidase (Dextran glucosidase)
           (Exo-1,6-alpha-glucosidase) (Glucodextranase)
          Length = 537

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -2

Query: 208 YIKDAFQKHFGNHVIISVKQCYQLQLE*HDTYSQ*NLRLDSNKHIAFDTDLQHLDIENKL 29
           Y+K+  Q  FGNH +++V + +    E    YS+       NK ++     +H+ +++K 
Sbjct: 217 YLKEMNQATFGNHDVMTVGETWGATPEIARQYSR-----PENKELSMVFQFEHVGLQHK- 270

Query: 28  YRYPNIP 8
              PN P
Sbjct: 271 ---PNAP 274
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,048,002
Number of Sequences: 369166
Number of extensions: 1242420
Number of successful extensions: 3093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)