Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H10
(491 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex... 119 5e-27
sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex... 117 2e-26
sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial precursor 63 4e-10
sp|P22135|ATP12_YEAST ATP12 protein, mitochondrial precursor 35 0.073
sp|Q9GQN0|RP16_DROME Ran-binding protein 16 32 1.1
sp|P48834|ZP4_FELCA Zona pellucida sperm-binding protein 4 ... 32 1.1
sp|P46566|SRG9_CAEEL Serpentine receptor class gamma-9 (Pro... 31 1.8
sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (... 30 3.1
sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 (p105) (Ba... 30 4.0
sp|Q59905|DEXB_STREQ Glucan 1,6-alpha-glucosidase (Dextran ... 29 5.2
>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2,
mitochondrial precursor
Length = 289
Score = 119 bits (297), Expect = 5e-27
Identities = 57/154 (37%), Positives = 90/154 (58%)
Frame = +1
Query: 7 MEYLDSDTICFRCPDVEDLYQMQCAYWNPILDFIGNRYHVTPIVTDNIVLPKLSHDCRNV 186
+++LD+DTIC+R + E L ++Q W+P++++ RY + + +I+ P + R V
Sbjct: 132 VKFLDTDTICYRVEEPETLVELQKNEWDPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREV 191
Query: 187 FERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQVNKWGNV 366
HL NMW L G + + LKS+ LTL L D L+VE+AV LSRLE EYQ+ KWGN+
Sbjct: 192 LTSHLSSYNMWALQGIEFVVAQLKSMLLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNI 251
Query: 367 PWYHEVDQAEMEIRVASSAFLIYCSQNAQYVVYK 468
W H+ + E+ R A+ ++ + V +K
Sbjct: 252 EWAHDYELQELRARTAAGTLFVHLCSESSTVKHK 285
>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2,
mitochondrial precursor (ATP12 homolog)
Length = 289
Score = 117 bits (292), Expect = 2e-26
Identities = 59/154 (38%), Positives = 88/154 (57%)
Frame = +1
Query: 7 MEYLDSDTICFRCPDVEDLYQMQCAYWNPILDFIGNRYHVTPIVTDNIVLPKLSHDCRNV 186
+++LD+DTIC+R + E L ++Q W+PI+++ RY V + +I+ P + R V
Sbjct: 132 VKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREV 191
Query: 187 FERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQVNKWGNV 366
HL N W L G + LKS+ LTL L D L+VE+AV LSRLE EYQ+ KWGN+
Sbjct: 192 LVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNI 251
Query: 367 PWYHEVDQAEMEIRVASSAFLIYCSQNAQYVVYK 468
W H+ + E+ R A+ I+ + V +K
Sbjct: 252 EWAHDYELQELRARTAAGTLFIHLCSESTTVKHK 285
>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial precursor
Length = 287
Score = 62.8 bits (151), Expect = 4e-10
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Frame = +1
Query: 4 IMEYLDSDTICFRCPDVE---DLYQMQCAYWNPILDFIGNRYHVTPIVTDN---IVLPKL 165
++ +LD+DTI P+ E L + Q W P+ + N+ V D I+ K
Sbjct: 128 LIRFLDTDTILIYSPETEYEGKLLEEQKENWWPLKETFENKLGVQLSYLDGDAGIIAHKQ 187
Query: 166 SHDCRNVFERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHILSVEEAVKLSRLESEYQ 345
+ + L N W L ++ + KS ++ + L+ E+A L+ LE +YQ
Sbjct: 188 TQETHERIRNWLSSLNSWQLAAFERSVSCCKSFIVSFMILKGYLNSEKAAALTNLELQYQ 247
Query: 346 VNKWGNVPWYHEVDQAEMEIRVASSAFLIYCSQN 447
N+WG++ E D +++ ++ASSA L C ++
Sbjct: 248 TNRWGSL----EDDNEDLKNKLASSAILSRCIED 277
>sp|P22135|ATP12_YEAST ATP12 protein, mitochondrial precursor
Length = 325
Score = 35.4 bits (80), Expect = 0.073
Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Frame = +1
Query: 4 IMEYLDSDTICFRCPDVE---DLYQMQCAYWNPIL----DFIGN-------RYHVTPIVT 141
++ YLD+DT+ P E L Q + PI+ +F+ N R +
Sbjct: 155 LLRYLDTDTLLVFSPMNEFEGRLRNAQNELYIPIIKGMEEFLRNFSSESNIRLQILDADI 214
Query: 142 DNIVLPKLSHDCRNVFERHLLCNNMWGLIGYQHCIETLKSVYLTLALTDHI--------- 294
+ + S +N ++++ + W L + + T KS + L ++
Sbjct: 215 HGLRGNQQSDIVKNAAKKYMSSLSPWDLAILEKTVLTTKSFICGVLLLENKKDTANLIPA 274
Query: 295 --LSVEEAVKLSRLESEYQVNKWGNVPWYHEVDQAEMEIRVASSAFLIY 435
++ V+ + LE+ +QV KWG V H+VD+ ++ ++ ++A +
Sbjct: 275 LKTDMDNIVRAATLETIFQVEKWGEVEDTHDVDKRDIRRKIHTAAIAAF 323
>sp|Q9GQN0|RP16_DROME Ran-binding protein 16
Length = 1098
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +1
Query: 193 RHLLCNNMWGLIGYQHCIETLKSVYLTL-ALTDHILSVEEAVKLSRLESEYQVNKWGNVP 369
R L NN H +E +K + TL L+D E L+RL+S YQ+ + VP
Sbjct: 287 RRSLFNNSERTKFLTHLVEGVKDILTTLHGLSDPDNYHEFCRLLARLKSNYQLGELIAVP 346
Query: 370 WYHEVDQAEMEIRVASSAFLIYCSQNAQYVV 462
Y E Q + V S ++ + Y++
Sbjct: 347 CYPEAIQLIAKFTVESLHLWLFAPNSVHYLL 377
>sp|P48834|ZP4_FELCA Zona pellucida sperm-binding protein 4 precursor (Zona pellucida
sperm-binding protein B)
Length = 570
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 358 PICSPGIQIPNDSALQPLPRIKYDRLKLMSNKPISKSQCNAGIQ*DPTCCYIKDAFQKHF 179
P+ + ++ PN +P K+DRL S+ PI++ CN CCY +A ++
Sbjct: 165 PLQNVALEAPNADLCDSVP--KWDRLPCASS-PITQGDCNK-----LGCCYKSEANSCYY 216
Query: 178 GNHV 167
GN V
Sbjct: 217 GNTV 220
>sp|P46566|SRG9_CAEEL Serpentine receptor class gamma-9 (Protein srg-9)
Length = 336
Score = 30.8 bits (68), Expect = 1.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 148 IVLPKLSHDCRNVFERH-LLCNNMWGLIGYQHCIETLKSVYLTL 276
+ +P+L F+ H LL N + L+ Y HC + L ++LTL
Sbjct: 89 VYVPQLCIPASKFFQSHSLLMNIYYPLLNYLHCAQPLIQIFLTL 132
>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (Origin recognition complex
protein 71 kDa subunit)
Length = 620
Score = 30.0 bits (66), Expect = 3.1
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Frame = -2
Query: 304 PRIKYDRL----KLMSNKPISKSQCNAGIQ*DPTCCYIKDAFQ----------------K 185
P+I Y +L +L NKP++ C +P+C Y +D F+ K
Sbjct: 336 PKIAYSQLAYENELQQNKPVNSIPCLILNGYNPSCNY-RDVFKEITDLLVPAELTRSETK 394
Query: 184 HFGNHVIISVKQ 149
++GNHVI+ +++
Sbjct: 395 YWGNHVILQIQK 406
>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 (p105) (Barren homolog) (CAPH homolog)
Length = 742
Score = 29.6 bits (65), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 153 NNVISYNWSNMIPIPNEI*DWIPISTLHLIQIFNIWTSKTNCIAIQIFHN 4
NN +N S+ +P+ + +WI ++T + I N W N I FH+
Sbjct: 54 NNSSPFNSSHQVPVLSNFEEWIKLATDNKINSTNTW----NFALIDYFHD 99
>sp|Q59905|DEXB_STREQ Glucan 1,6-alpha-glucosidase (Dextran glucosidase)
(Exo-1,6-alpha-glucosidase) (Glucodextranase)
Length = 537
Score = 29.3 bits (64), Expect = 5.2
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -2
Query: 208 YIKDAFQKHFGNHVIISVKQCYQLQLE*HDTYSQ*NLRLDSNKHIAFDTDLQHLDIENKL 29
Y+K+ Q FGNH +++V + + E YS+ NK ++ +H+ +++K
Sbjct: 217 YLKEMNQATFGNHDVMTVGETWGATPEIARQYSR-----PENKELSMVFQFEHVGLQHK- 270
Query: 28 YRYPNIP 8
PN P
Sbjct: 271 ---PNAP 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,048,002
Number of Sequences: 369166
Number of extensions: 1242420
Number of successful extensions: 3093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)