Planaria EST Database


DrC_02579

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02579
         (174 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JZ26|UVRC_NEIMB  UvrABC system protein C (UvrC protein)...    30   2.2  
sp|Q9JU21|UVRC_NEIMA  UvrABC system protein C (UvrC protein)...    30   2.2  
sp|Q01217|ARG56_YEAST  Protein ARG5,6, mitochondrial precurs...    28   5.0  
>sp|Q9JZ26|UVRC_NEIMB UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
          Length = 617

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 140 SCLIYLLKNLEPEKYLKYNTTT 75
           SC++Y  +N++P +Y +YN TT
Sbjct: 418 SCVVYDEQNIQPSQYRRYNITT 439
>sp|Q9JU21|UVRC_NEIMA UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
          Length = 617

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 140 SCLIYLLKNLEPEKYLKYNTTT 75
           SC++Y  +N++P +Y +YN TT
Sbjct: 418 SCVVYDEQNIQPSQYRRYNITT 439
>sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial precursor [Contains:
           N-acetyl-gamma-glutamyl-phosphate reductase
           (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA
           dehydrogenase); Acetylglutamate kinase (NAG kinase)
           (AGK) (N-acetyl-L-glutamate 5-phosphotransferase)]
          Length = 863

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -2

Query: 143 RSCLIYLLKNL----EPEKYLKYNTTTISQQF 60
           RS +I LL N+    E E+YLKY T+   QQF
Sbjct: 68  RSTVIQLLNNISTKREVEQYLKYFTSVSQQQF 99
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,152,949
Number of Sequences: 369166
Number of extensions: 171891
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)