Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H03
(174 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JZ26|UVRC_NEIMB UvrABC system protein C (UvrC protein)... 30 2.2
sp|Q9JU21|UVRC_NEIMA UvrABC system protein C (UvrC protein)... 30 2.2
sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial precurs... 28 5.0
>sp|Q9JZ26|UVRC_NEIMB UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 617
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 140 SCLIYLLKNLEPEKYLKYNTTT 75
SC++Y +N++P +Y +YN TT
Sbjct: 418 SCVVYDEQNIQPSQYRRYNITT 439
>sp|Q9JU21|UVRC_NEIMA UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 617
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 140 SCLIYLLKNLEPEKYLKYNTTT 75
SC++Y +N++P +Y +YN TT
Sbjct: 418 SCVVYDEQNIQPSQYRRYNITT 439
>sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial precursor [Contains:
N-acetyl-gamma-glutamyl-phosphate reductase
(N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA
dehydrogenase); Acetylglutamate kinase (NAG kinase)
(AGK) (N-acetyl-L-glutamate 5-phosphotransferase)]
Length = 863
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -2
Query: 143 RSCLIYLLKNL----EPEKYLKYNTTTISQQF 60
RS +I LL N+ E E+YLKY T+ QQF
Sbjct: 68 RSTVIQLLNNISTKREVEQYLKYFTSVSQQQF 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,152,949
Number of Sequences: 369166
Number of extensions: 171891
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)