Planaria EST Database


DrC_02576

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02576
         (287 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15117|FYB_HUMAN  FYN-binding protein (FYN-T-binding prot...    29   3.8  
sp|Q00160|VG37_ICHV1  Hypothetical gene 37 protein                 28   5.0  
sp|Q96CW5|GCP3_HUMAN  Gamma-tubulin complex component 3 (GCP...    28   6.5  
sp|Q7VMW5|LPXB_HAEDU  Lipid-A-disaccharide synthase                28   6.5  
>sp|O15117|FYB_HUMAN FYN-binding protein (FYN-T-binding protein) (FYB-120/130)
           (p120/p130) (SLP-76 associated phosphoprotein)
           (SLAP-130)
          Length = 783

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +3

Query: 18  RPKFVDIHKFIQFKASNSTSQAQ-----IILPAPPP 110
           RP  VD+ KF +  + NSTS+ Q       LP PPP
Sbjct: 362 RPPNVDLTKFHKTSSGNSTSKGQTSYSTTSLPPPPP 397
>sp|Q00160|VG37_ICHV1 Hypothetical gene 37 protein
          Length = 670

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 285 PSKNISIYKDKVPYVRTITICPNNAYVRI 199
           P+ +ISI++DKVPY  T+     N  + I
Sbjct: 42  PNTDISIFRDKVPYTPTVDDAALNKLIMI 70
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 (GCP-3) (Spindle pole body
           protein Spc98 homolog) (hSpc98) (hGCP3) (h104p)
          Length = 907

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 61  RQTRLVKLK*FSQLHHQMITQPNSNLAWSIIYLRISI 171
           RQ R      FS+LH ++ +Q      WSI+YL +S+
Sbjct: 64  RQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSL 100
>sp|Q7VMW5|LPXB_HAEDU Lipid-A-disaccharide synthase
          Length = 390

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 15  LRPKFVDIHKFIQFKASNSTSQAQIILPAPPPD 113
           L+ +F D+HK IQ  A +  +QA I L A   D
Sbjct: 357 LKQRFTDLHKMIQCDADSKAAQAVIDLLANSDD 389
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,720,009
Number of Sequences: 369166
Number of extensions: 510176
Number of successful extensions: 1073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)