Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G16
(287 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15117|FYB_HUMAN FYN-binding protein (FYN-T-binding prot... 29 3.8
sp|Q00160|VG37_ICHV1 Hypothetical gene 37 protein 28 5.0
sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 (GCP... 28 6.5
sp|Q7VMW5|LPXB_HAEDU Lipid-A-disaccharide synthase 28 6.5
>sp|O15117|FYB_HUMAN FYN-binding protein (FYN-T-binding protein) (FYB-120/130)
(p120/p130) (SLP-76 associated phosphoprotein)
(SLAP-130)
Length = 783
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +3
Query: 18 RPKFVDIHKFIQFKASNSTSQAQ-----IILPAPPP 110
RP VD+ KF + + NSTS+ Q LP PPP
Sbjct: 362 RPPNVDLTKFHKTSSGNSTSKGQTSYSTTSLPPPPP 397
>sp|Q00160|VG37_ICHV1 Hypothetical gene 37 protein
Length = 670
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 285 PSKNISIYKDKVPYVRTITICPNNAYVRI 199
P+ +ISI++DKVPY T+ N + I
Sbjct: 42 PNTDISIFRDKVPYTPTVDDAALNKLIMI 70
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 (GCP-3) (Spindle pole body
protein Spc98 homolog) (hSpc98) (hGCP3) (h104p)
Length = 907
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 61 RQTRLVKLK*FSQLHHQMITQPNSNLAWSIIYLRISI 171
RQ R FS+LH ++ +Q WSI+YL +S+
Sbjct: 64 RQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSL 100
>sp|Q7VMW5|LPXB_HAEDU Lipid-A-disaccharide synthase
Length = 390
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 15 LRPKFVDIHKFIQFKASNSTSQAQIILPAPPPD 113
L+ +F D+HK IQ A + +QA I L A D
Sbjct: 357 LKQRFTDLHKMIQCDADSKAAQAVIDLLANSDD 389
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,720,009
Number of Sequences: 369166
Number of extensions: 510176
Number of successful extensions: 1073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)