Planaria EST Database


DrC_02571

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02571
         (799 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09248|YP9C_CAEEL  Hypothetical protein C28H8.12 in chrom...    39   0.016
sp|Q5AD77|SNX4_CANAL  Sorting nexin-4 (Autophagy-related pro...    33   0.69 
sp|O42184|REST_CHICK  Restin (Cytoplasmic linker protein 170...    33   0.90 
sp|P62134|RAD50_METMP  DNA double-strand break repair rad50 ...    33   0.90 
sp|Q8WYB5|MYST4_HUMAN  Histone acetyltransferase MYST4 (MYST...    33   0.90 
sp|O94833|BPAEA_HUMAN  Bullous pemphigoid antigen 1, isoform...    33   0.90 
sp|P44587|Y232_HAEIN  Hypothetical protein HI0232                  33   1.2  
sp|O34389|MAO3_BACSU  Probable NAD-dependent malic enzyme 3 ...    33   1.2  
sp|P16154|TOXA_CLODI  Toxin A                                      33   1.2  
sp|Q09949|YSH8_CAEEL  Hypothetical protein F12A10.8 in chrom...    33   1.2  
>sp|Q09248|YP9C_CAEEL Hypothetical protein C28H8.12 in chromosome III
          Length = 331

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
 Frame = +2

Query: 65  EKWEKCLIELSKVNSPPNREQNFKSTSRNNVPSEYLNISEQKQRYIKQNNGQPRRVESNI 244
           EK  + L E++ +N     ++N K+   N    E L   E K   + Q+NG+  RVE ++
Sbjct: 94  EKLNRILYEVADLNEQIRADENLKTDLLNAEVLENLE-KEVKTLQVAQSNGKTARVEHDV 152

Query: 245 RHTSIPSDS-----EEYYRR----------PSTPP-NAIERTKYKNDQKRPRGISTVKED 376
              ++ +DS     E   RR          PS P  + IE  K + +      +S +++ 
Sbjct: 153 ELPNVRTDSKVATLENRLRRIEQVIGSSVIPSAPVLDTIEDLKLRCETLNHSYVSGLEQR 212

Query: 377 PMM---KDDEIFETKTLDEL-----RKKYPVSDKTKRWSIATSDLVGKSN-----DELFI 517
             M   K ++I ET+  +++     +K   + +  ++W +A S L    N     + L  
Sbjct: 213 LNMMLTKLEKIDETRANNDIDENLDKKVDEILELMQKWDVACSSLPSNVNKVKALNRLHE 272

Query: 518 MLIQLNREKSHMDIWKETLEKQL 586
            +       SH+   +E LEK++
Sbjct: 273 QVQHFAGGLSHLKTIREKLEKEV 295
>sp|Q5AD77|SNX4_CANAL Sorting nexin-4 (Autophagy-related protein 24)
          Length = 630

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
 Frame = +2

Query: 230 VESNIRHTSIPSDSEEYYRRPSTPPNAIERTKYKNDQKRPRGISTVKEDPMMKDDEIFET 409
           + S  + TSI  D ++     +TP +   ++K    +K  +  S  K    +      ET
Sbjct: 1   MSSEDQFTSIQWDRDDGENTNNTPTDTTIKSKSSKSKKSKKSSSKKKNGNKISPSSTTET 60

Query: 410 KTLDELRKK--------------YPVSDKTKRWSIATSDLVGKSNDELFIMLIQLNREKS 547
              D+  K+              + V D  K  ++  + +     D    +L+ +N +  
Sbjct: 61  SDADDTMKEVTDQLESTQINDDNHEVDDGNKEQNVDANQIGNSDEDPTNSLLLPVNPQPK 120

Query: 548 HMDIWKETLEKQLQAIDESL 607
                KE L++QLQ   + L
Sbjct: 121 EPQEEKEDLQQQLQQPQQQL 140
>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
          Length = 1433

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +2

Query: 410 KTLDELRKKYPVSDKTKRWSI----ATSDLVGKSNDELFIMLIQLNREKSH-MDIWKETL 574
           + +  L++K+  S++  R  I    A+++ +GK N+ L   L   N+E S  +++WK  L
Sbjct: 558 REMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSKL 617

Query: 575 EKQLQAIDESLD 610
           E  + +  ++++
Sbjct: 618 ESAIASHQQAME 629
>sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase
          Length = 993

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
 Frame = +2

Query: 17  QHNQLFLMIPENLKDFEKWEKCLIELSKVNSPPNREQNFKSTSRNNVPSEYLNISEQKQR 196
           ++NQL     ENLKD          +S++ +     QNFK+ S N V  E  NISE ++ 
Sbjct: 239 ENNQL----KENLKDI---------ISEIKNINLEIQNFKN-SLNLVAEESKNISENEEN 284

Query: 197 YIKQNNGQPRRVESNIRHTSIPSDSEEYYRRPSTPPNAIE-----RTKYKNDQKRPRGIS 361
           Y K    + +  E N +     S+ E Y +  +   + ++     +   K+++K P    
Sbjct: 285 YKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNP---D 341

Query: 362 TVKEDPMMKDDEIFETKTLDELRKK 436
            +KE+    D++I     LD++++K
Sbjct: 342 ELKENLKENDEKIL---ILDKIKEK 363
>sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
            SAS2 and TIP60 protein 4) (Histone acetyltransferase
            MOZ2) (Monocytic leukemia zinc finger protein-related
            factor) (Histone acetyltransferase MORF)
          Length = 2073

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
 Frame = +2

Query: 44   PENLKDFEKWEKCLIE-LSKVNSPPNREQNFKST-----SRNNVPSEYLNISEQKQRYIK 205
            PE LK  + W K     LSK      R+  FK            P E + + EQK+    
Sbjct: 1239 PEPLKCKQVWPKGTKRGLSKWRQNKERKTGFKLNLYTPPETPMEPDEQVTVEEQKETSEG 1298

Query: 206  QNNGQPRRVESNIRHTSIPSDSEEYYRRPST----PPNAIERTKYKNDQKRPRGISTVKE 373
            + +  P R+E  ++ T      +E  RR  T     PN     K ++D  +P      +E
Sbjct: 1299 KTSPSPIRIEEEVKETGEALLPQEENRREETCAPVSPNTSPGEKPEDDLIKPEEEEEEEE 1358

Query: 374  DPMMKDDE 397
            +   +++E
Sbjct: 1359 EEEEEEEE 1366
>sp|O94833|BPAEA_HUMAN Bullous pemphigoid antigen 1, isoforms 6/9/10 (Trabeculin-beta)
            (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
            protein) (Dystonia musculorum protein) (Dystonin)
          Length = 5171

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
 Frame = +2

Query: 155  VPSEYLN--ISEQKQRYIKQNNGQPRRVESNIRHTSIPSDSEEYYRRPSTPPNAIERTKY 328
            V  EYL   +S Q +  +K      ++ E++++H      S   +++ S    A   TK 
Sbjct: 2395 VKEEYLKAELSRQLEGILKSFKDVEQKAENHVQHLQSACASSHQFQQMSRDFQAWLDTK- 2453

Query: 329  KNDQKRPRGISTVKE--DPMMKDDEIFETKTLDELRKKYPVSDKTKRWSIATSD--LVGK 496
            K +Q +   IS   +  + ++KD + F +KTL      Y   +KT    IA  +  L+  
Sbjct: 2454 KEEQNKSHPISAKLDVLESLIKDHKDF-SKTLTAQSHMY---EKT----IAEGENLLLKT 2505

Query: 497  SNDELFIMLIQLNREKSHMDIWKETLEKQLQAIDESLD 610
               E   + +QLN  K++ D + + ++++   + ESL+
Sbjct: 2506 QGSEKAALQLQLNTIKTNWDTFNKQVKERENKLKESLE 2543
>sp|P44587|Y232_HAEIN Hypothetical protein HI0232
          Length = 462

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/61 (29%), Positives = 36/61 (59%)
 Frame = +2

Query: 260 PSDSEEYYRRPSTPPNAIERTKYKNDQKRPRGISTVKEDPMMKDDEIFETKTLDELRKKY 439
           P ++E +   P+   +A  +  Y+ ++ RP+ +  VK+D  + ++   E +TL EL+K+Y
Sbjct: 93  PKNAERFQIGPAYH-SASWQLAYRKNENRPKNLGNVKKDIYISNNLALE-ETLKELQKQY 150

Query: 440 P 442
           P
Sbjct: 151 P 151
>sp|O34389|MAO3_BACSU Probable NAD-dependent malic enzyme 3 (NAD-ME 3)
          Length = 566

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
 Frame = +2

Query: 155 VPSEYLNISEQKQRYIKQNNGQPRRVESNIRHTSIPSDSEEYYRR------------PST 298
           +P + L I +Q +R  +Q + QP  +  N+  T++   +E  + R              T
Sbjct: 47  LPPKVLTIDDQAKRAYEQYSAQPDDLSKNVYLTALHDRNETLFYRLLNDHLGEMLPIVYT 106

Query: 299 PPNAIERTKYKNDQKRPRGISTVKEDP 379
           P       +Y ++ ++PRG+    +DP
Sbjct: 107 PTVGTAIQRYSHEYRKPRGLYLSIDDP 133
>sp|P16154|TOXA_CLODI Toxin A
          Length = 2710

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 392  DEIFETKTLDELRKKYPVS--DKTKRWSIATSDLVGKSNDELFIMLIQLNREKSHMDIWK 565
            DE++E K L+ L +KY +S  D +K  S  +   + KSN E     + +  EK     + 
Sbjct: 869  DELYELKKLNNLDEKYLISFEDISKNNSTYSVRFINKSNGE----SVYVETEKEIFSKYS 924

Query: 566  ETLEKQLQAIDESL 607
            E + K++  I  S+
Sbjct: 925  EHITKEISTIKNSI 938
>sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chromosome II
          Length = 437

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +2

Query: 167 YLNI-SEQKQRYIKQNNGQPRRVESNIRHTSIP---SDSEEYYRRPSTPPNAIERTKYKN 334
           YL I SE+KQ  IK +  +PR  E+N  H   P      E+++     P NA E  K++ 
Sbjct: 299 YLEIGSEEKQAPIKASASKPRFDEANF-HNEDPLNLDSQEDFFETSYLPKNADESKKHQK 357

Query: 335 DQKRPRGISTVKED 376
                 G  T K D
Sbjct: 358 SMLPSFGDYTTKSD 371
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,061,791
Number of Sequences: 369166
Number of extensions: 1769270
Number of successful extensions: 6044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6038
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)