Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F22
(799 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09248|YP9C_CAEEL Hypothetical protein C28H8.12 in chrom... 39 0.016
sp|Q5AD77|SNX4_CANAL Sorting nexin-4 (Autophagy-related pro... 33 0.69
sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170... 33 0.90
sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ... 33 0.90
sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 (MYST... 33 0.90
sp|O94833|BPAEA_HUMAN Bullous pemphigoid antigen 1, isoform... 33 0.90
sp|P44587|Y232_HAEIN Hypothetical protein HI0232 33 1.2
sp|O34389|MAO3_BACSU Probable NAD-dependent malic enzyme 3 ... 33 1.2
sp|P16154|TOXA_CLODI Toxin A 33 1.2
sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chrom... 33 1.2
>sp|Q09248|YP9C_CAEEL Hypothetical protein C28H8.12 in chromosome III
Length = 331
Score = 38.9 bits (89), Expect = 0.016
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Frame = +2
Query: 65 EKWEKCLIELSKVNSPPNREQNFKSTSRNNVPSEYLNISEQKQRYIKQNNGQPRRVESNI 244
EK + L E++ +N ++N K+ N E L E K + Q+NG+ RVE ++
Sbjct: 94 EKLNRILYEVADLNEQIRADENLKTDLLNAEVLENLE-KEVKTLQVAQSNGKTARVEHDV 152
Query: 245 RHTSIPSDS-----EEYYRR----------PSTPP-NAIERTKYKNDQKRPRGISTVKED 376
++ +DS E RR PS P + IE K + + +S +++
Sbjct: 153 ELPNVRTDSKVATLENRLRRIEQVIGSSVIPSAPVLDTIEDLKLRCETLNHSYVSGLEQR 212
Query: 377 PMM---KDDEIFETKTLDEL-----RKKYPVSDKTKRWSIATSDLVGKSN-----DELFI 517
M K ++I ET+ +++ +K + + ++W +A S L N + L
Sbjct: 213 LNMMLTKLEKIDETRANNDIDENLDKKVDEILELMQKWDVACSSLPSNVNKVKALNRLHE 272
Query: 518 MLIQLNREKSHMDIWKETLEKQL 586
+ SH+ +E LEK++
Sbjct: 273 QVQHFAGGLSHLKTIREKLEKEV 295
>sp|Q5AD77|SNX4_CANAL Sorting nexin-4 (Autophagy-related protein 24)
Length = 630
Score = 33.5 bits (75), Expect = 0.69
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Frame = +2
Query: 230 VESNIRHTSIPSDSEEYYRRPSTPPNAIERTKYKNDQKRPRGISTVKEDPMMKDDEIFET 409
+ S + TSI D ++ +TP + ++K +K + S K + ET
Sbjct: 1 MSSEDQFTSIQWDRDDGENTNNTPTDTTIKSKSSKSKKSKKSSSKKKNGNKISPSSTTET 60
Query: 410 KTLDELRKK--------------YPVSDKTKRWSIATSDLVGKSNDELFIMLIQLNREKS 547
D+ K+ + V D K ++ + + D +L+ +N +
Sbjct: 61 SDADDTMKEVTDQLESTQINDDNHEVDDGNKEQNVDANQIGNSDEDPTNSLLLPVNPQPK 120
Query: 548 HMDIWKETLEKQLQAIDESL 607
KE L++QLQ + L
Sbjct: 121 EPQEEKEDLQQQLQQPQQQL 140
>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
Length = 1433
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +2
Query: 410 KTLDELRKKYPVSDKTKRWSI----ATSDLVGKSNDELFIMLIQLNREKSH-MDIWKETL 574
+ + L++K+ S++ R I A+++ +GK N+ L L N+E S +++WK L
Sbjct: 558 REMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSKL 617
Query: 575 EKQLQAIDESLD 610
E + + ++++
Sbjct: 618 ESAIASHQQAME 629
>sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase
Length = 993
Score = 33.1 bits (74), Expect = 0.90
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Frame = +2
Query: 17 QHNQLFLMIPENLKDFEKWEKCLIELSKVNSPPNREQNFKSTSRNNVPSEYLNISEQKQR 196
++NQL ENLKD +S++ + QNFK+ S N V E NISE ++
Sbjct: 239 ENNQL----KENLKDI---------ISEIKNINLEIQNFKN-SLNLVAEESKNISENEEN 284
Query: 197 YIKQNNGQPRRVESNIRHTSIPSDSEEYYRRPSTPPNAIE-----RTKYKNDQKRPRGIS 361
Y K + + E N + S+ E Y + + + ++ + K+++K P
Sbjct: 285 YKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNP---D 341
Query: 362 TVKEDPMMKDDEIFETKTLDELRKK 436
+KE+ D++I LD++++K
Sbjct: 342 ELKENLKENDEKIL---ILDKIKEK 363
>sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4) (Histone acetyltransferase
MOZ2) (Monocytic leukemia zinc finger protein-related
factor) (Histone acetyltransferase MORF)
Length = 2073
Score = 33.1 bits (74), Expect = 0.90
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
Frame = +2
Query: 44 PENLKDFEKWEKCLIE-LSKVNSPPNREQNFKST-----SRNNVPSEYLNISEQKQRYIK 205
PE LK + W K LSK R+ FK P E + + EQK+
Sbjct: 1239 PEPLKCKQVWPKGTKRGLSKWRQNKERKTGFKLNLYTPPETPMEPDEQVTVEEQKETSEG 1298
Query: 206 QNNGQPRRVESNIRHTSIPSDSEEYYRRPST----PPNAIERTKYKNDQKRPRGISTVKE 373
+ + P R+E ++ T +E RR T PN K ++D +P +E
Sbjct: 1299 KTSPSPIRIEEEVKETGEALLPQEENRREETCAPVSPNTSPGEKPEDDLIKPEEEEEEEE 1358
Query: 374 DPMMKDDE 397
+ +++E
Sbjct: 1359 EEEEEEEE 1366
>sp|O94833|BPAEA_HUMAN Bullous pemphigoid antigen 1, isoforms 6/9/10 (Trabeculin-beta)
(Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
protein) (Dystonia musculorum protein) (Dystonin)
Length = 5171
Score = 33.1 bits (74), Expect = 0.90
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Frame = +2
Query: 155 VPSEYLN--ISEQKQRYIKQNNGQPRRVESNIRHTSIPSDSEEYYRRPSTPPNAIERTKY 328
V EYL +S Q + +K ++ E++++H S +++ S A TK
Sbjct: 2395 VKEEYLKAELSRQLEGILKSFKDVEQKAENHVQHLQSACASSHQFQQMSRDFQAWLDTK- 2453
Query: 329 KNDQKRPRGISTVKE--DPMMKDDEIFETKTLDELRKKYPVSDKTKRWSIATSD--LVGK 496
K +Q + IS + + ++KD + F +KTL Y +KT IA + L+
Sbjct: 2454 KEEQNKSHPISAKLDVLESLIKDHKDF-SKTLTAQSHMY---EKT----IAEGENLLLKT 2505
Query: 497 SNDELFIMLIQLNREKSHMDIWKETLEKQLQAIDESLD 610
E + +QLN K++ D + + ++++ + ESL+
Sbjct: 2506 QGSEKAALQLQLNTIKTNWDTFNKQVKERENKLKESLE 2543
>sp|P44587|Y232_HAEIN Hypothetical protein HI0232
Length = 462
Score = 32.7 bits (73), Expect = 1.2
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 260 PSDSEEYYRRPSTPPNAIERTKYKNDQKRPRGISTVKEDPMMKDDEIFETKTLDELRKKY 439
P ++E + P+ +A + Y+ ++ RP+ + VK+D + ++ E +TL EL+K+Y
Sbjct: 93 PKNAERFQIGPAYH-SASWQLAYRKNENRPKNLGNVKKDIYISNNLALE-ETLKELQKQY 150
Query: 440 P 442
P
Sbjct: 151 P 151
>sp|O34389|MAO3_BACSU Probable NAD-dependent malic enzyme 3 (NAD-ME 3)
Length = 566
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Frame = +2
Query: 155 VPSEYLNISEQKQRYIKQNNGQPRRVESNIRHTSIPSDSEEYYRR------------PST 298
+P + L I +Q +R +Q + QP + N+ T++ +E + R T
Sbjct: 47 LPPKVLTIDDQAKRAYEQYSAQPDDLSKNVYLTALHDRNETLFYRLLNDHLGEMLPIVYT 106
Query: 299 PPNAIERTKYKNDQKRPRGISTVKEDP 379
P +Y ++ ++PRG+ +DP
Sbjct: 107 PTVGTAIQRYSHEYRKPRGLYLSIDDP 133
>sp|P16154|TOXA_CLODI Toxin A
Length = 2710
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 392 DEIFETKTLDELRKKYPVS--DKTKRWSIATSDLVGKSNDELFIMLIQLNREKSHMDIWK 565
DE++E K L+ L +KY +S D +K S + + KSN E + + EK +
Sbjct: 869 DELYELKKLNNLDEKYLISFEDISKNNSTYSVRFINKSNGE----SVYVETEKEIFSKYS 924
Query: 566 ETLEKQLQAIDESL 607
E + K++ I S+
Sbjct: 925 EHITKEISTIKNSI 938
>sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chromosome II
Length = 437
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 167 YLNI-SEQKQRYIKQNNGQPRRVESNIRHTSIP---SDSEEYYRRPSTPPNAIERTKYKN 334
YL I SE+KQ IK + +PR E+N H P E+++ P NA E K++
Sbjct: 299 YLEIGSEEKQAPIKASASKPRFDEANF-HNEDPLNLDSQEDFFETSYLPKNADESKKHQK 357
Query: 335 DQKRPRGISTVKED 376
G T K D
Sbjct: 358 SMLPSFGDYTTKSD 371
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,061,791
Number of Sequences: 369166
Number of extensions: 1769270
Number of successful extensions: 6044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6038
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)