Planaria EST Database


DrC_02570

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02570
         (595 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QWF0|CAF1A_MOUSE  Chromatin assembly factor 1 subunit A...    78   2e-14
sp|Q13111|CAF1A_HUMAN  Chromatin assembly factor 1 subunit A...    74   3e-13
sp|Q12495|CAC1_YEAST  Chromatin assembly factor 1 p90 subuni...    38   0.022
sp|P18490|PCX_DROME  Pecanex protein                               32   1.2  
sp|P00642|T2E1_ECOLI  Type II restriction enzyme EcoRI (Endo...    30   3.5  
sp|P55772|ENP1_MOUSE  Ectonucleoside triphosphate diphosphoh...    29   7.8  
sp|Q4JBG7|SYW_SULAC  Tryptophanyl-tRNA synthetase (Tryptopha...    29   7.8  
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
           assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
           (CAF-Ip150)
          Length = 911

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 46/125 (36%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
 Frame = +1

Query: 55  ICQKTWPLSEPDVEIATSKRL----------KTKTFLFLENIRPAYFGTWRKKSEIITPL 204
           +C     +   DV I  S ++          + K   F EN RPAY+GTW KK+ II P 
Sbjct: 504 VCGHDTDIMNRDVVIVESSKVDGVSERKKFGRMKLLQFSENHRPAYWGTWNKKTAIIRPR 563

Query: 205 TPLAEDKTFFDYELDSDQEWEYE--SGXXXXXXXXXXXXXXXXXXXXXXFLVPHGYLSDD 378
            P A+DK   DYE+DSD EWE E                          F VPHGYLS+D
Sbjct: 564 NPWAQDKDLLDYEVDSDDEWEEEEPGESLSHSEGDEDDDVGEDEDEDDGFFVPHGYLSED 623

Query: 379 EDVID 393
           E V +
Sbjct: 624 EGVTE 628
>sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
           assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
           (CAF-Ip150)
          Length = 938

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 44/114 (38%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
 Frame = +1

Query: 118 KTKTFLFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFFDYELDSDQEWEYE--SGXXXX 291
           + K   F EN RPAY+GTW KK+ +I    P A+D    DYE+DSD+EWE E        
Sbjct: 538 RMKLLQFCENHRPAYWGTWNKKTALIRARDPWAQDTKLLDYEVDSDEEWEEEEPGESLSH 597

Query: 292 XXXXXXXXXXXXXXXXXXFLVPHGYLSDDEDVID--VDPGEELPLSNNKMRKPL 447
                             F VPHGYLS+DE V +   DP       N+K+R+ L
Sbjct: 598 SEGDDDDDMGEDEDEDDGFFVPHGYLSEDEGVTEECADP------ENHKVRQKL 645
>sp|Q12495|CAC1_YEAST Chromatin assembly factor 1 p90 subunit (CAF-1 90 kDa subunit)
           (RAP1 localization factor 2)
          Length = 606

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 124 KTFLFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFFDYELDSDQEWEYE 273
           K   F EN+RP + GT+      + P  P +   T F+Y+ DSD EW  E
Sbjct: 345 KYIKFYENVRPPFIGTY-SMDFTLPPNDPFSTKGTGFNYDYDSDVEWVNE 393
>sp|P18490|PCX_DROME Pecanex protein
          Length = 3433

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +1

Query: 352  VPHGYLSDDEDVIDVDPGEELPLSNNKMRKPLTNETKQIMIDIREKQFQAEVKQQVHHIN 531
            V  G   +DE+  D + G   PL N++ R+P T   ++I  D   KQ + E+  Q   + 
Sbjct: 843  VSAGNDDEDEETEDNNTGSRSPLLNDRNRQPAT--LREIQAD---KQLRQELSHQSGAVI 897

Query: 532  PNIIGPIFTRNDSSNNLTSS 591
            P    P+  R+++ +   SS
Sbjct: 898  PAPNPPVPIRSEADSGCPSS 917
>sp|P00642|T2E1_ECOLI Type II restriction enzyme EcoRI (Endonuclease EcoRI) (R.EcoRI)
          Length = 277

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 361 GYLSDDEDVIDVDPGEELPLSNNKMRKPLTNETKQIMIDIREKQFQAEVKQQVHHINPNI 540
           G   D     D+  GE   L    ++K L+NE  Q+    R+   + E+ + +  I+P++
Sbjct: 22  GIFGDYAKAHDLAVGEVSKL----VKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDL 77

Query: 541 IGPIFTRNDS 570
            G +F  N S
Sbjct: 78  GGTLFVSNSS 87
>sp|P55772|ENP1_MOUSE Ectonucleoside triphosphate diphosphohydrolase 1 (NTPDase1)
           (Ecto-ATP diphosphohydrolase) (ATPDase) (Lymphoid cell
           activation antigen) (Ecto-apyrase) (CD39 antigen)
          Length = 510

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 526 YDGLVVSLRLEIVSLLYRSLFVWFHWSKASSSYYWKEAV 410
           Y GL+V   L +V++    LF++     +  SY+WKEAV
Sbjct: 477 YIGLMVLFSLLLVAVAITGLFIY-----SKPSYFWKEAV 510
>sp|Q4JBG7|SYW_SULAC Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
          Length = 381

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 133 LFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFF---DYELDSDQEWEYES 276
           + + ++ P  F  W ++   +     + +D+ F    DY LD  +EW YE+
Sbjct: 86  MHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFLRNVDYTLDQTKEWSYEN 136
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.313    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,149,039
Number of Sequences: 369166
Number of extensions: 945319
Number of successful extensions: 1918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)