Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F20
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A... 78 2e-14
sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A... 74 3e-13
sp|Q12495|CAC1_YEAST Chromatin assembly factor 1 p90 subuni... 38 0.022
sp|P18490|PCX_DROME Pecanex protein 32 1.2
sp|P00642|T2E1_ECOLI Type II restriction enzyme EcoRI (Endo... 30 3.5
sp|P55772|ENP1_MOUSE Ectonucleoside triphosphate diphosphoh... 29 7.8
sp|Q4JBG7|SYW_SULAC Tryptophanyl-tRNA synthetase (Tryptopha... 29 7.8
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
(CAF-Ip150)
Length = 911
Score = 77.8 bits (190), Expect = 2e-14
Identities = 46/125 (36%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Frame = +1
Query: 55 ICQKTWPLSEPDVEIATSKRL----------KTKTFLFLENIRPAYFGTWRKKSEIITPL 204
+C + DV I S ++ + K F EN RPAY+GTW KK+ II P
Sbjct: 504 VCGHDTDIMNRDVVIVESSKVDGVSERKKFGRMKLLQFSENHRPAYWGTWNKKTAIIRPR 563
Query: 205 TPLAEDKTFFDYELDSDQEWEYE--SGXXXXXXXXXXXXXXXXXXXXXXFLVPHGYLSDD 378
P A+DK DYE+DSD EWE E F VPHGYLS+D
Sbjct: 564 NPWAQDKDLLDYEVDSDDEWEEEEPGESLSHSEGDEDDDVGEDEDEDDGFFVPHGYLSED 623
Query: 379 EDVID 393
E V +
Sbjct: 624 EGVTE 628
>sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
(CAF-Ip150)
Length = 938
Score = 73.9 bits (180), Expect = 3e-13
Identities = 44/114 (38%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 118 KTKTFLFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFFDYELDSDQEWEYE--SGXXXX 291
+ K F EN RPAY+GTW KK+ +I P A+D DYE+DSD+EWE E
Sbjct: 538 RMKLLQFCENHRPAYWGTWNKKTALIRARDPWAQDTKLLDYEVDSDEEWEEEEPGESLSH 597
Query: 292 XXXXXXXXXXXXXXXXXXFLVPHGYLSDDEDVID--VDPGEELPLSNNKMRKPL 447
F VPHGYLS+DE V + DP N+K+R+ L
Sbjct: 598 SEGDDDDDMGEDEDEDDGFFVPHGYLSEDEGVTEECADP------ENHKVRQKL 645
>sp|Q12495|CAC1_YEAST Chromatin assembly factor 1 p90 subunit (CAF-1 90 kDa subunit)
(RAP1 localization factor 2)
Length = 606
Score = 37.7 bits (86), Expect = 0.022
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 124 KTFLFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFFDYELDSDQEWEYE 273
K F EN+RP + GT+ + P P + T F+Y+ DSD EW E
Sbjct: 345 KYIKFYENVRPPFIGTY-SMDFTLPPNDPFSTKGTGFNYDYDSDVEWVNE 393
>sp|P18490|PCX_DROME Pecanex protein
Length = 3433
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +1
Query: 352 VPHGYLSDDEDVIDVDPGEELPLSNNKMRKPLTNETKQIMIDIREKQFQAEVKQQVHHIN 531
V G +DE+ D + G PL N++ R+P T ++I D KQ + E+ Q +
Sbjct: 843 VSAGNDDEDEETEDNNTGSRSPLLNDRNRQPAT--LREIQAD---KQLRQELSHQSGAVI 897
Query: 532 PNIIGPIFTRNDSSNNLTSS 591
P P+ R+++ + SS
Sbjct: 898 PAPNPPVPIRSEADSGCPSS 917
>sp|P00642|T2E1_ECOLI Type II restriction enzyme EcoRI (Endonuclease EcoRI) (R.EcoRI)
Length = 277
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 361 GYLSDDEDVIDVDPGEELPLSNNKMRKPLTNETKQIMIDIREKQFQAEVKQQVHHINPNI 540
G D D+ GE L ++K L+NE Q+ R+ + E+ + + I+P++
Sbjct: 22 GIFGDYAKAHDLAVGEVSKL----VKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDL 77
Query: 541 IGPIFTRNDS 570
G +F N S
Sbjct: 78 GGTLFVSNSS 87
>sp|P55772|ENP1_MOUSE Ectonucleoside triphosphate diphosphohydrolase 1 (NTPDase1)
(Ecto-ATP diphosphohydrolase) (ATPDase) (Lymphoid cell
activation antigen) (Ecto-apyrase) (CD39 antigen)
Length = 510
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 526 YDGLVVSLRLEIVSLLYRSLFVWFHWSKASSSYYWKEAV 410
Y GL+V L +V++ LF++ + SY+WKEAV
Sbjct: 477 YIGLMVLFSLLLVAVAITGLFIY-----SKPSYFWKEAV 510
>sp|Q4JBG7|SYW_SULAC Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 381
Score = 29.3 bits (64), Expect = 7.8
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 133 LFLENIRPAYFGTWRKKSEIITPLTPLAEDKTFF---DYELDSDQEWEYES 276
+ + ++ P F W ++ + + +D+ F DY LD +EW YE+
Sbjct: 86 MHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFLRNVDYTLDQTKEWSYEN 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,149,039
Number of Sequences: 369166
Number of extensions: 945319
Number of successful extensions: 1918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)