Planaria EST Database


DrC_02569

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02569
         (351 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A2K3|SYE_SALTY  Glutamyl-tRNA synthetase (Glutamate--tR...    32   0.45 
sp|Q57LU0|SYE_SALCH  Glutamyl-tRNA synthetase (Glutamate--tR...    32   0.45 
sp|Q5PNE5|SYE_SALPA  Glutamyl-tRNA synthetase (Glutamate--tR...    32   0.45 
sp|P04805|SYE_ECOLI  Glutamyl-tRNA synthetase (Glutamate--tR...    30   1.3  
sp|Q8XBN2|SYE_ECO57  Glutamyl-tRNA synthetase (Glutamate--tR...    30   1.3  
sp|Q8FFC9|SYE_ECOL6  Glutamyl-tRNA synthetase (Glutamate--tR...    30   1.3  
sp|Q83K84|SYE_SHIFL  Glutamyl-tRNA synthetase (Glutamate--tR...    30   1.7  
sp|P68293|APOA1_PAPHA  Apolipoprotein A-I precursor (Apo-AI)...    30   2.2  
sp|Q48318|HTR5_HALSA  Halobacterial transducer protein V           30   2.2  
sp|P02647|APOA1_HUMAN  Apolipoprotein A-I precursor (Apo-AI)...    29   2.9  
>sp|P0A2K3|SYE_SALTY Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
 sp|P0A2K4|SYE_SALTI Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  SA  DW+ E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|Q57LU0|SYE_SALCH Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  SA  DW+ E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|Q5PNE5|SYE_SALPA Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  SA  DW+ E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|P04805|SYE_ECOLI Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  +A  DW  E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q8XBN2|SYE_ECO57 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  +A  DW  E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q8FFC9|SYE_ECOL6 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  +A  DW  E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLTAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q83K84|SYE_SHIFL Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 471

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 75  ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
           AR PLE V D  +A  DW  E+     Q  AD  +  +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWPAENVHHAIQATADELEVGMGKV 424
>sp|P68293|APOA1_PAPHA Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
 sp|P68292|APOA1_MACFA Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
          Length = 267

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 36  GSEVKESWEQSNNARTPLEKVSDSFSAAIDWAKESAQK-VADTAKNAVGK 182
           GS+ +  W+Q    +TP ++V D  +  ++  K+S +  V+    +A+GK
Sbjct: 15  GSQARHFWQQDEPPQTPWDRVKDLVTVYVEALKDSGKDYVSQFEGSALGK 64
>sp|Q48318|HTR5_HALSA Halobacterial transducer protein V
          Length = 545

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
 Frame = +3

Query: 15  GFQNLNDGSE-VKESWEQ----SNNARTPLEKVS---DSFSAAIDWAKESAQKVADTA 164
           G + + D S+ V ES ++    +++ R  LE V+   DS+SA ++    +AQ VADTA
Sbjct: 236 GAKEIQDASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTA 293
>sp|P02647|APOA1_HUMAN Apolipoprotein A-I precursor (Apo-AI) (ApoA-I) [Contains:
           Apolipoprotein A-I(1-242)]
          Length = 267

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 36  GSEVKESWEQSNNARTPLEKVSDSFSAAIDWAKESAQK-VADTAKNAVGK 182
           GS+ +  W+Q    ++P ++V D  +  +D  K+S +  V+    +A+GK
Sbjct: 15  GSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGK 64
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,801,058
Number of Sequences: 369166
Number of extensions: 475885
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)