Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F16
(351 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P0A2K3|SYE_SALTY Glutamyl-tRNA synthetase (Glutamate--tR... 32 0.45
sp|Q57LU0|SYE_SALCH Glutamyl-tRNA synthetase (Glutamate--tR... 32 0.45
sp|Q5PNE5|SYE_SALPA Glutamyl-tRNA synthetase (Glutamate--tR... 32 0.45
sp|P04805|SYE_ECOLI Glutamyl-tRNA synthetase (Glutamate--tR... 30 1.3
sp|Q8XBN2|SYE_ECO57 Glutamyl-tRNA synthetase (Glutamate--tR... 30 1.3
sp|Q8FFC9|SYE_ECOL6 Glutamyl-tRNA synthetase (Glutamate--tR... 30 1.3
sp|Q83K84|SYE_SHIFL Glutamyl-tRNA synthetase (Glutamate--tR... 30 1.7
sp|P68293|APOA1_PAPHA Apolipoprotein A-I precursor (Apo-AI)... 30 2.2
sp|Q48318|HTR5_HALSA Halobacterial transducer protein V 30 2.2
sp|P02647|APOA1_HUMAN Apolipoprotein A-I precursor (Apo-AI)... 29 2.9
>sp|P0A2K3|SYE_SALTY Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
sp|P0A2K4|SYE_SALTI Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D SA DW+ E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|Q57LU0|SYE_SALCH Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D SA DW+ E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|Q5PNE5|SYE_SALPA Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D SA DW+ E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLSAITDWSAENVHHAIQATADELEVGMGKV 424
>sp|P04805|SYE_ECOLI Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D +A DW E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q8XBN2|SYE_ECO57 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D +A DW E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q8FFC9|SYE_ECOL6 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D +A DW E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLTAITDWTAENVHHAIQATADELEVGMGKV 424
>sp|Q83K84|SYE_SHIFL Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 471
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 ARTPLEKVSDSFSAAIDWAKESA----QKVADTAKNAVGKV 185
AR PLE V D +A DW E+ Q AD + +GKV
Sbjct: 384 ARQPLEVVRDKLAAITDWPAENVHHAIQATADELEVGMGKV 424
>sp|P68293|APOA1_PAPHA Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
sp|P68292|APOA1_MACFA Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
Length = 267
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 36 GSEVKESWEQSNNARTPLEKVSDSFSAAIDWAKESAQK-VADTAKNAVGK 182
GS+ + W+Q +TP ++V D + ++ K+S + V+ +A+GK
Sbjct: 15 GSQARHFWQQDEPPQTPWDRVKDLVTVYVEALKDSGKDYVSQFEGSALGK 64
>sp|Q48318|HTR5_HALSA Halobacterial transducer protein V
Length = 545
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +3
Query: 15 GFQNLNDGSE-VKESWEQ----SNNARTPLEKVS---DSFSAAIDWAKESAQKVADTA 164
G + + D S+ V ES ++ +++ R LE V+ DS+SA ++ +AQ VADTA
Sbjct: 236 GAKEIQDASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTA 293
>sp|P02647|APOA1_HUMAN Apolipoprotein A-I precursor (Apo-AI) (ApoA-I) [Contains:
Apolipoprotein A-I(1-242)]
Length = 267
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 36 GSEVKESWEQSNNARTPLEKVSDSFSAAIDWAKESAQK-VADTAKNAVGK 182
GS+ + W+Q ++P ++V D + +D K+S + V+ +A+GK
Sbjct: 15 GSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGK 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,801,058
Number of Sequences: 369166
Number of extensions: 475885
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)