Planaria EST Database


DrC_02567

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02567
         (816 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70196|TRAF6_MOUSE  TNF receptor-associated factor 6            45   2e-04
sp|Q9Y4K3|TRAF6_HUMAN  TNF receptor-associated factor 6 (Int...    43   0.001
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    32   2.7  
sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5            32   2.7  
sp|Q9P243|ZN406_HUMAN  Zinc finger protein 406                     32   2.7  
sp|P39429|TRAF2_MOUSE  TNF receptor-associated factor 2            31   4.6  
sp|P38756|YHG3_YEAST  Hypothetical 48.9 kDa protein in RPL14...    31   4.6  
sp|P25502|PUT3_YEAST  Proline utilization trans-activator          30   6.1  
sp|P28167|ZFH2_DROME  Zinc finger protein 2 (Zinc finger hom...    30   6.1  
sp|P22312|PU92_SCICO  Puff II/9-2 protein precursor                30   7.9  
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
          Length = 530

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/55 (43%), Positives = 30/55 (54%)
 Frame = +1

Query: 31  EILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCP 195
           EIL L + +  DN     I  L VKCP K C  K +LR +EDH   C +  V+CP
Sbjct: 110 EIL-LENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHCEFALVNCP 163
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
           (RING finger protein 85)
          Length = 522

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = +1

Query: 31  EILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCP 195
           EIL L + +  DN     I  L VKCP + C  K +LR +EDH   C +  + CP
Sbjct: 110 EIL-LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 163
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 23/109 (21%), Positives = 51/109 (46%)
 Frame = +1

Query: 22  CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYL 201
           CK +++ +N   L ++  N+   +  V CP  +C        +++H+ +C      CP+ 
Sbjct: 171 CKKDVVVIN---LQNHEENL-CPEYPVFCP-NNCAKIILKTEVDEHLAVCPEAEQDCPFK 225

Query: 202 NIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLKISVDK 348
           +  C  ++    N+  H  S +  H +L+++    L  +I  L  S+++
Sbjct: 226 HYGCAVTD-KRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQ 273
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 55  ILADNSVNIRISKLNVKCP-LKSCDFKCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIH 231
           +  DN     +  L+V C     C+ +  L   +DH++ C++++V CP  N  C  + + 
Sbjct: 93  VFKDNCCKREVLNLHVYCKNAPGCNARIILGRFQDHLQHCSFQAVPCP--NESCREAMLR 150

Query: 232 AGNIGDHLQS 261
             ++ +HL +
Sbjct: 151 K-DVKEHLSA 159

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 25/109 (22%), Positives = 47/109 (43%)
 Frame = +1

Query: 22  CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYL 201
           CK +I+  N   L D+  N       V CP + C        + +H+ +C      CP+ 
Sbjct: 171 CKRDIVVTN---LQDHEEN-SCPAYPVSCPNR-CVQTIPRARVNEHLTVCPEAEQDCPFK 225

Query: 202 NIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLKISVDK 348
           +  C       GN+ +H ++ + +H  L+++    L   I  L  S+++
Sbjct: 226 HYGCTVKG-KRGNLLEHERAALQDHMLLVLEKNYQLEQRISDLYQSLEQ 273
>sp|Q9P243|ZN406_HUMAN Zinc finger protein 406
          Length = 1104

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
 Frame = +1

Query: 88  SKLNVKCPLKSCDFKC-DLRSIEDHIRI---CNYRSVSCPYLNIVCNSSNIHAGNIGDHL 255
           S + +KCP   CD+   D   ++ H+++    + RS SCP    VC  S      I  H+
Sbjct: 655 SNILLKCPTDGCDYSTPDKYKLQAHLKVHTALDKRSYSCP----VCEKSFSEDRLIKSHI 710

Query: 256 QSEIGNHSKLLIDCIDNLNNEIGRLKISVDKLGEENKMLKC 378
           ++   NH ++ +  I  +     +LK  + K     + +KC
Sbjct: 711 KT---NHPEVSMSTISEVLGRRVQLKGLIGK-----RAMKC 743
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
          Length = 501

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 130 KCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIHAGNIGDHLQSEIGNHSKLLI 291
           K    + +DH+R C+   V C +  + C S  +   N+ DH    +  H  LL+
Sbjct: 196 KIpreTFQDHVRACSKCRVLCRFHTVGC-SEMVETENLQDHELQRLREHLALLL 248
>sp|P38756|YHG3_YEAST Hypothetical 48.9 kDa protein in RPL14B-GPA1 intergenic region
          Length = 429

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = +1

Query: 22  CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDF-KCDLRSIEDHIRICNYRSVSCPY 198
           C M I S    I+  +  NI I  LN  C     D  K  ++ +++H+      S   P+
Sbjct: 90  CTMLIRSGCQKIMIIDPENISIDSLNTHCCAVLSDIGKPKVQCLKEHL------SKIAPW 143

Query: 199 LNIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLK 333
             I   +      N  D + ++ G     ++DC+DNL +++  L+
Sbjct: 144 SEIKARAKAWTKENSHDLIFAD-GESPTFIVDCLDNLESKVDLLE 187
>sp|P25502|PUT3_YEAST Proline utilization trans-activator
          Length = 979

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
 Frame = +1

Query: 67  NSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIHAGNIG 246
           NS N   S  N   P+ +     +L SI D++    ++        I+  S    +    
Sbjct: 279 NSNNYLFSSYNFLNPISTI---VNLNSINDNLSPLMFK--------IILKSDTDGSSGQE 327

Query: 247 DHLQSEIG--NHSKLLIDCIDNLNN------EIGRLKISVDKLGEENKML 372
           + +Q ++   N++KLLIDC  N N+        G +K  ++KL  ENK L
Sbjct: 328 EVIQFQLPSYNYTKLLIDCFINYNDGCFYFFNEGLVKCGINKLYLENKWL 377
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
          Length = 3005

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 151 EDHIRICNYRSVSC---PYLNIVCNSSNIHAGNIGDHLQSE 264
           + H R+    S SC   PY   +CN S    GN+  H+QS+
Sbjct: 596 QQHPRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSD 636
>sp|P22312|PU92_SCICO Puff II/9-2 protein precursor
          Length = 286

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 19  DCKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSC 192
           DCK E   L + I   N    ++ +   +C  +  D +C L   +  + ICN   ++C
Sbjct: 140 DCKKENAKLLNKIEELNCTITQLQEKLERCRGRERDLQCQLDECKKKLNICNNELIAC 197
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,225,278
Number of Sequences: 369166
Number of extensions: 1227567
Number of successful extensions: 3953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3950
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)