Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F03
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 45 2e-04
sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Int... 43 0.001
sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RIN... 32 2.7
sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5 32 2.7
sp|Q9P243|ZN406_HUMAN Zinc finger protein 406 32 2.7
sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 31 4.6
sp|P38756|YHG3_YEAST Hypothetical 48.9 kDa protein in RPL14... 31 4.6
sp|P25502|PUT3_YEAST Proline utilization trans-activator 30 6.1
sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger hom... 30 6.1
sp|P22312|PU92_SCICO Puff II/9-2 protein precursor 30 7.9
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
Length = 530
Score = 45.1 bits (105), Expect = 2e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +1
Query: 31 EILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCP 195
EIL L + + DN I L VKCP K C K +LR +EDH C + V+CP
Sbjct: 110 EIL-LENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHCEFALVNCP 163
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
(RING finger protein 85)
Length = 522
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 31 EILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCP 195
EIL L + + DN I L VKCP + C K +LR +EDH C + + CP
Sbjct: 110 EIL-LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 163
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
Length = 557
Score = 31.6 bits (70), Expect = 2.7
Identities = 23/109 (21%), Positives = 51/109 (46%)
Frame = +1
Query: 22 CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYL 201
CK +++ +N L ++ N+ + V CP +C +++H+ +C CP+
Sbjct: 171 CKKDVVVIN---LQNHEENL-CPEYPVFCP-NNCAKIILKTEVDEHLAVCPEAEQDCPFK 225
Query: 202 NIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLKISVDK 348
+ C ++ N+ H S + H +L+++ L +I L S+++
Sbjct: 226 HYGCAVTD-KRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQ 273
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
Length = 558
Score = 31.6 bits (70), Expect = 2.7
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 55 ILADNSVNIRISKLNVKCP-LKSCDFKCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIH 231
+ DN + L+V C C+ + L +DH++ C++++V CP N C + +
Sbjct: 93 VFKDNCCKREVLNLHVYCKNAPGCNARIILGRFQDHLQHCSFQAVPCP--NESCREAMLR 150
Query: 232 AGNIGDHLQS 261
++ +HL +
Sbjct: 151 K-DVKEHLSA 159
Score = 31.6 bits (70), Expect = 2.7
Identities = 25/109 (22%), Positives = 47/109 (43%)
Frame = +1
Query: 22 CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYL 201
CK +I+ N L D+ N V CP + C + +H+ +C CP+
Sbjct: 171 CKRDIVVTN---LQDHEEN-SCPAYPVSCPNR-CVQTIPRARVNEHLTVCPEAEQDCPFK 225
Query: 202 NIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLKISVDK 348
+ C GN+ +H ++ + +H L+++ L I L S+++
Sbjct: 226 HYGCTVKG-KRGNLLEHERAALQDHMLLVLEKNYQLEQRISDLYQSLEQ 273
>sp|Q9P243|ZN406_HUMAN Zinc finger protein 406
Length = 1104
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 88 SKLNVKCPLKSCDFKC-DLRSIEDHIRI---CNYRSVSCPYLNIVCNSSNIHAGNIGDHL 255
S + +KCP CD+ D ++ H+++ + RS SCP VC S I H+
Sbjct: 655 SNILLKCPTDGCDYSTPDKYKLQAHLKVHTALDKRSYSCP----VCEKSFSEDRLIKSHI 710
Query: 256 QSEIGNHSKLLIDCIDNLNNEIGRLKISVDKLGEENKMLKC 378
++ NH ++ + I + +LK + K + +KC
Sbjct: 711 KT---NHPEVSMSTISEVLGRRVQLKGLIGK-----RAMKC 743
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
Length = 501
Score = 30.8 bits (68), Expect = 4.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 130 KCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIHAGNIGDHLQSEIGNHSKLLI 291
K + +DH+R C+ V C + + C S + N+ DH + H LL+
Sbjct: 196 KIpreTFQDHVRACSKCRVLCRFHTVGC-SEMVETENLQDHELQRLREHLALLL 248
>sp|P38756|YHG3_YEAST Hypothetical 48.9 kDa protein in RPL14B-GPA1 intergenic region
Length = 429
Score = 30.8 bits (68), Expect = 4.6
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 22 CKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDF-KCDLRSIEDHIRICNYRSVSCPY 198
C M I S I+ + NI I LN C D K ++ +++H+ S P+
Sbjct: 90 CTMLIRSGCQKIMIIDPENISIDSLNTHCCAVLSDIGKPKVQCLKEHL------SKIAPW 143
Query: 199 LNIVCNSSNIHAGNIGDHLQSEIGNHSKLLIDCIDNLNNEIGRLK 333
I + N D + ++ G ++DC+DNL +++ L+
Sbjct: 144 SEIKARAKAWTKENSHDLIFAD-GESPTFIVDCLDNLESKVDLLE 187
>sp|P25502|PUT3_YEAST Proline utilization trans-activator
Length = 979
Score = 30.4 bits (67), Expect = 6.1
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 NSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSCPYLNIVCNSSNIHAGNIG 246
NS N S N P+ + +L SI D++ ++ I+ S +
Sbjct: 279 NSNNYLFSSYNFLNPISTI---VNLNSINDNLSPLMFK--------IILKSDTDGSSGQE 327
Query: 247 DHLQSEIG--NHSKLLIDCIDNLNN------EIGRLKISVDKLGEENKML 372
+ +Q ++ N++KLLIDC N N+ G +K ++KL ENK L
Sbjct: 328 EVIQFQLPSYNYTKLLIDCFINYNDGCFYFFNEGLVKCGINKLYLENKWL 377
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
Length = 3005
Score = 30.4 bits (67), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 151 EDHIRICNYRSVSC---PYLNIVCNSSNIHAGNIGDHLQSE 264
+ H R+ S SC PY +CN S GN+ H+QS+
Sbjct: 596 QQHPRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSD 636
>sp|P22312|PU92_SCICO Puff II/9-2 protein precursor
Length = 286
Score = 30.0 bits (66), Expect = 7.9
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 19 DCKMEILSLNDNILADNSVNIRISKLNVKCPLKSCDFKCDLRSIEDHIRICNYRSVSC 192
DCK E L + I N ++ + +C + D +C L + + ICN ++C
Sbjct: 140 DCKKENAKLLNKIEELNCTITQLQEKLERCRGRERDLQCQLDECKKKLNICNNELIAC 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,225,278
Number of Sequences: 369166
Number of extensions: 1227567
Number of successful extensions: 3953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3950
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)