Planaria EST Database


DrC_02565

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02565
         (431 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UTK5|ALM1_SCHPO  Abnormal long morphology protein 1 (Sp8)     36   0.040
sp|Q60287|YZ28_METJA  Hypothetical protein MJECL28                 32   0.57 
sp|O67124|RAD50_AQUAE  Probable DNA double-strand break repa...    32   0.75 
sp|Q96KN7|RPGR1_HUMAN  X-linked retinitis pigmentosa GTPase ...    31   0.97 
sp|P57413|RSMC_BUCAI  Ribosomal RNA small subunit methyltran...    31   1.3  
sp|O55035|PPIG_RAT  Peptidyl-prolyl cis-trans isomerase G (P...    30   1.7  
sp|Q9H3R5|CENPH_HUMAN  Centromere protein H (Kinetochore pro...    30   2.2  
sp|O14248|TEA3_SCHPO  Tip elongation aberrant protein 3 (Cel...    30   2.2  
sp|Q72SG7|TIG_LEPIC  Trigger factor (TF) >gi|41018229|sp|Q8F...    30   2.2  
sp|Q9CZR2|NALD2_MOUSE  N-acetylated-alpha-linked acidic dipe...    30   2.8  
>sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
          Length = 1727

 Score = 35.8 bits (81), Expect = 0.040
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
 Frame = +3

Query: 27  KNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFR--APTINESRKSLKEISKSAQ 200
           KN E  +N SKI++    +++NL +        SI      A  I++  KS+ E ++  +
Sbjct: 590 KNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELE 649

Query: 201 KLSPIY-----FILKPISERNSNLKTEEKEI--DLDNS 293
           K   +Y      I + +S+RN +L +E + I  +L+NS
Sbjct: 650 KNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENS 687
>sp|Q60287|YZ28_METJA Hypothetical protein MJECL28
          Length = 1272

 Score = 32.0 bits (71), Expect = 0.57
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 42   IVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSA-QKLSPIY 218
            ++N+ K +D+K N D+N  ++  L++           INE +K +KEI+++  +K   IY
Sbjct: 1006 MLNKGKDDDKKSNLDENTIKK-CLEE-----------INEYKKIVKEINENEDRKTKKIY 1053

Query: 219  FI-LKPISERNSNLKTEEKEID 281
             I LK + E    L T  + I+
Sbjct: 1054 HIDLKLLEEHKDKLSTLARIIE 1075
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
          Length = 978

 Score = 31.6 bits (70), Expect = 0.75
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = +3

Query: 27  KNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTIN-------ESRKSLKEI 185
           K  E+I  + K+ + K   +K       L+DE S        I        E ++  KE+
Sbjct: 281 KRIEEI--DKKLTELKVRKNKLTKELAVLKDELSFAQEELNRIEAEKEKFKEEKEREKEL 338

Query: 186 SKSAQKLSPIYFILKPISERNSNLKTEEKEID 281
               +KL  I  ILK +S+ +S+LK +E+E +
Sbjct: 339 EHRLKKLQEIKEILKELSQLSSSLKEKEREYE 370
>sp|Q96KN7|RPGR1_HUMAN X-linked retinitis pigmentosa GTPase regulator-interacting protein
           1 (RPGR-interacting protein 1)
          Length = 1286

 Score = 31.2 bits (69), Expect = 0.97
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
 Frame = +3

Query: 6   LKKTNEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEI 185
           LKK   E+NA  ++ ++++ + ++  +  L +   +         +   +NE R  LKE 
Sbjct: 279 LKKLLHERNASLVMTKAQLTEVQEAYETLLQKNQGILSAAHEALLKQ--VNELRAELKEE 336

Query: 186 SKSA-------QKLSPIYFILKPISERNSNLKTEEKEIDLDNSD 296
           SK A       + +S +   LK   ER  +L+ E K ++ DN D
Sbjct: 337 SKKAVSLKSQLEDVSILQMTLKEFQERVEDLEKERKLLN-DNYD 379
>sp|P57413|RSMC_BUCAI Ribosomal RNA small subunit methyltransferase C (rRNA
           (guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207
           methyltransferase)
          Length = 338

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
 Frame = -2

Query: 310 YDESTSELSRSISFSSVFKLEFRSEIGFKMK*IGDNFCADLLISFKDFLDSLIVGARKYL 131
           Y  ++++ +  I +S+++   F+    F +      F  DL I+F + ++ +I GA+KYL
Sbjct: 239 YTLNSNKFNGKIVYSNLYSNVFKK---FDLIISNPPFHNDLQINF-NIIEKMICGAKKYL 294

Query: 130 IENSSCR---------EYLLNKFLSEFCFLSSIFDSFTICSAFF 26
            +    R          +LLNKF  ++  +      + +  AF+
Sbjct: 295 TKTGELRFVTSRFINCHFLLNKFFQKYYVIKET-SQYKVYQAFY 337
>sp|O55035|PPIG_RAT Peptidyl-prolyl cis-trans isomerase G (Peptidyl-prolyl isomerase G)
           (PPIase G) (Rotamase G) (Cyclophilin G) (Matrin
           cyclophilin) (Matrin-cyp)
          Length = 752

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +3

Query: 9   KKTNEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEIS 188
           +K  +EK  +   +ESK  D ++NS+K+        D+++    +    ++SR   KE S
Sbjct: 416 RKIEKEKKVKDHKSESKERDIRRNSEKD--------DKYNKNKVKKRGKSKSRSKSKERS 467

Query: 189 KSAQKLSPIY----FILKPISERNSNLKTEEKEIDLDNSDVD 302
           KS ++ S         ++  S+   +  T+EKE  LD+   D
Sbjct: 468 KSKERDSKHSRHEDKRVRSRSKERDHETTKEKEKQLDSKGKD 509
>sp|Q9H3R5|CENPH_HUMAN Centromere protein H (Kinetochore protein CENP-H)
          Length = 247

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +3

Query: 18  NEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSA 197
           +EEK  EQI+ E +IE + ++ +  +     ++  F IK      +  S    K + K +
Sbjct: 64  SEEKTPEQIMQEKQIEAKIEDLENEI---EEVKVAFEIKKLALDRMRLSTALKKNLEKIS 120

Query: 198 QKLSPIYFILKPISERNS-NLKTEEKEIDLDNSDVD 302
           ++ S +   +K + E N   +K++++  DL+   +D
Sbjct: 121 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLD 156
>sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 (Cell polarity protein tea3)
          Length = 1125

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 150  TINESRKSLKEISKSAQKLSPIYFILKPISE--RNSNLKTEEKEIDLDNS 293
            +INE++ +LKE SKS QK+S +   L+ + E  R S    E +  +L NS
Sbjct: 861  SINENKDNLKEFSKSKQKISYLESQLEGLHELLRESQRLCEGRTKELLNS 910
>sp|Q72SG7|TIG_LEPIC Trigger factor (TF)
 sp|Q8F351|TIG_LEPIN Trigger factor (TF)
          Length = 451

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 30  NAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSAQKLS 209
           +++ +  ES + +  ++   N+   + L      KY      N  +K LKE+ +S QKL+
Sbjct: 298 DSKYVFPESYLREESEHVFHNMIHEFKLPHMTMEKY-----ANMVQKDLKEVQESFQKLA 352

Query: 210 PI----YFILKPISERNSNLKTEEKEIDLD 287
                 YF  + I+E   N+   E++ D D
Sbjct: 353 ETRLKHYFTRQKIAE-IENISYSEQDFDAD 381
>sp|Q9CZR2|NALD2_MOUSE N-acetylated-alpha-linked acidic dipeptidase II (NAALADase II)
           (Glutamate carboxypeptidase III) (GCPIII)
           (N-acetylaspartylglutamate peptidase II) (NAAG-peptidase
           II)
          Length = 740

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 YSLQDEF-SIKYFRAPTINESRKSLKEISKSAQKLSPIYFILKPISERNSNLKTEEKEID 281
           +++QD   ++K + A   N S+K  +++   A    P++  +K  SE  S+      ++D
Sbjct: 585 FNIQDYAKALKNYAASIFNISKKHDQQLRNHAVSFDPLFSAVKNFSEAASDFHRRLTQVD 644

Query: 282 LDN 290
           L+N
Sbjct: 645 LNN 647
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,245,437
Number of Sequences: 369166
Number of extensions: 387100
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)