Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E09
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8) 36 0.040
sp|Q60287|YZ28_METJA Hypothetical protein MJECL28 32 0.57
sp|O67124|RAD50_AQUAE Probable DNA double-strand break repa... 32 0.75
sp|Q96KN7|RPGR1_HUMAN X-linked retinitis pigmentosa GTPase ... 31 0.97
sp|P57413|RSMC_BUCAI Ribosomal RNA small subunit methyltran... 31 1.3
sp|O55035|PPIG_RAT Peptidyl-prolyl cis-trans isomerase G (P... 30 1.7
sp|Q9H3R5|CENPH_HUMAN Centromere protein H (Kinetochore pro... 30 2.2
sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 (Cel... 30 2.2
sp|Q72SG7|TIG_LEPIC Trigger factor (TF) >gi|41018229|sp|Q8F... 30 2.2
sp|Q9CZR2|NALD2_MOUSE N-acetylated-alpha-linked acidic dipe... 30 2.8
>sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
Length = 1727
Score = 35.8 bits (81), Expect = 0.040
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +3
Query: 27 KNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFR--APTINESRKSLKEISKSAQ 200
KN E +N SKI++ +++NL + SI A I++ KS+ E ++ +
Sbjct: 590 KNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELE 649
Query: 201 KLSPIY-----FILKPISERNSNLKTEEKEI--DLDNS 293
K +Y I + +S+RN +L +E + I +L+NS
Sbjct: 650 KNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENS 687
>sp|Q60287|YZ28_METJA Hypothetical protein MJECL28
Length = 1272
Score = 32.0 bits (71), Expect = 0.57
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 42 IVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSA-QKLSPIY 218
++N+ K +D+K N D+N ++ L++ INE +K +KEI+++ +K IY
Sbjct: 1006 MLNKGKDDDKKSNLDENTIKK-CLEE-----------INEYKKIVKEINENEDRKTKKIY 1053
Query: 219 FI-LKPISERNSNLKTEEKEID 281
I LK + E L T + I+
Sbjct: 1054 HIDLKLLEEHKDKLSTLARIIE 1075
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
Length = 978
Score = 31.6 bits (70), Expect = 0.75
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +3
Query: 27 KNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTIN-------ESRKSLKEI 185
K E+I + K+ + K +K L+DE S I E ++ KE+
Sbjct: 281 KRIEEI--DKKLTELKVRKNKLTKELAVLKDELSFAQEELNRIEAEKEKFKEEKEREKEL 338
Query: 186 SKSAQKLSPIYFILKPISERNSNLKTEEKEID 281
+KL I ILK +S+ +S+LK +E+E +
Sbjct: 339 EHRLKKLQEIKEILKELSQLSSSLKEKEREYE 370
>sp|Q96KN7|RPGR1_HUMAN X-linked retinitis pigmentosa GTPase regulator-interacting protein
1 (RPGR-interacting protein 1)
Length = 1286
Score = 31.2 bits (69), Expect = 0.97
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Frame = +3
Query: 6 LKKTNEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEI 185
LKK E+NA ++ ++++ + ++ + L + + + +NE R LKE
Sbjct: 279 LKKLLHERNASLVMTKAQLTEVQEAYETLLQKNQGILSAAHEALLKQ--VNELRAELKEE 336
Query: 186 SKSA-------QKLSPIYFILKPISERNSNLKTEEKEIDLDNSD 296
SK A + +S + LK ER +L+ E K ++ DN D
Sbjct: 337 SKKAVSLKSQLEDVSILQMTLKEFQERVEDLEKERKLLN-DNYD 379
>sp|P57413|RSMC_BUCAI Ribosomal RNA small subunit methyltransferase C (rRNA
(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207
methyltransferase)
Length = 338
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Frame = -2
Query: 310 YDESTSELSRSISFSSVFKLEFRSEIGFKMK*IGDNFCADLLISFKDFLDSLIVGARKYL 131
Y ++++ + I +S+++ F+ F + F DL I+F + ++ +I GA+KYL
Sbjct: 239 YTLNSNKFNGKIVYSNLYSNVFKK---FDLIISNPPFHNDLQINF-NIIEKMICGAKKYL 294
Query: 130 IENSSCR---------EYLLNKFLSEFCFLSSIFDSFTICSAFF 26
+ R +LLNKF ++ + + + AF+
Sbjct: 295 TKTGELRFVTSRFINCHFLLNKFFQKYYVIKET-SQYKVYQAFY 337
>sp|O55035|PPIG_RAT Peptidyl-prolyl cis-trans isomerase G (Peptidyl-prolyl isomerase G)
(PPIase G) (Rotamase G) (Cyclophilin G) (Matrin
cyclophilin) (Matrin-cyp)
Length = 752
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +3
Query: 9 KKTNEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEIS 188
+K +EK + +ESK D ++NS+K+ D+++ + ++SR KE S
Sbjct: 416 RKIEKEKKVKDHKSESKERDIRRNSEKD--------DKYNKNKVKKRGKSKSRSKSKERS 467
Query: 189 KSAQKLSPIY----FILKPISERNSNLKTEEKEIDLDNSDVD 302
KS ++ S ++ S+ + T+EKE LD+ D
Sbjct: 468 KSKERDSKHSRHEDKRVRSRSKERDHETTKEKEKQLDSKGKD 509
>sp|Q9H3R5|CENPH_HUMAN Centromere protein H (Kinetochore protein CENP-H)
Length = 247
Score = 30.0 bits (66), Expect = 2.2
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 18 NEEKNAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSA 197
+EEK EQI+ E +IE + ++ + + ++ F IK + S K + K +
Sbjct: 64 SEEKTPEQIMQEKQIEAKIEDLENEI---EEVKVAFEIKKLALDRMRLSTALKKNLEKIS 120
Query: 198 QKLSPIYFILKPISERNS-NLKTEEKEIDLDNSDVD 302
++ S + +K + E N +K++++ DL+ +D
Sbjct: 121 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLD 156
>sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 (Cell polarity protein tea3)
Length = 1125
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 TINESRKSLKEISKSAQKLSPIYFILKPISE--RNSNLKTEEKEIDLDNS 293
+INE++ +LKE SKS QK+S + L+ + E R S E + +L NS
Sbjct: 861 SINENKDNLKEFSKSKQKISYLESQLEGLHELLRESQRLCEGRTKELLNS 910
>sp|Q72SG7|TIG_LEPIC Trigger factor (TF)
sp|Q8F351|TIG_LEPIN Trigger factor (TF)
Length = 451
Score = 30.0 bits (66), Expect = 2.2
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 30 NAEQIVNESKIEDRKQNSDKNLFRRYSLQDEFSIKYFRAPTINESRKSLKEISKSAQKLS 209
+++ + ES + + ++ N+ + L KY N +K LKE+ +S QKL+
Sbjct: 298 DSKYVFPESYLREESEHVFHNMIHEFKLPHMTMEKY-----ANMVQKDLKEVQESFQKLA 352
Query: 210 PI----YFILKPISERNSNLKTEEKEIDLD 287
YF + I+E N+ E++ D D
Sbjct: 353 ETRLKHYFTRQKIAE-IENISYSEQDFDAD 381
>sp|Q9CZR2|NALD2_MOUSE N-acetylated-alpha-linked acidic dipeptidase II (NAALADase II)
(Glutamate carboxypeptidase III) (GCPIII)
(N-acetylaspartylglutamate peptidase II) (NAAG-peptidase
II)
Length = 740
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 YSLQDEF-SIKYFRAPTINESRKSLKEISKSAQKLSPIYFILKPISERNSNLKTEEKEID 281
+++QD ++K + A N S+K +++ A P++ +K SE S+ ++D
Sbjct: 585 FNIQDYAKALKNYAASIFNISKKHDQQLRNHAVSFDPLFSAVKNFSEAASDFHRRLTQVD 644
Query: 282 LDN 290
L+N
Sbjct: 645 LNN 647
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,245,437
Number of Sequences: 369166
Number of extensions: 387100
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)