Planaria EST Database


DrC_02564

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02564
         (322 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12116|TMS1_YEAST  Membrane protein TMS1                        29   2.9  
sp|O59751|KLP6_SCHPO  Kinesin-like protein 6                       28   5.0  
>sp|Q12116|TMS1_YEAST Membrane protein TMS1
          Length = 473

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 224 GYYVFHRYHYLL*CATTVTSLVFIIDRSTEDSTCATKNTGACTIFDLLLLAVV 66
           G++  HR ++ L C   + +LV    +ST D   A +N+     F L L  +V
Sbjct: 81  GFFTVHRLNFALGCLHLILALVLTGVKSTNDVRAALQNSWWSLKFILYLCLIV 133
>sp|O59751|KLP6_SCHPO Kinesin-like protein 6
          Length = 784

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 134 DSTCATKNTGACTIFDLLLLAVVRFCTNGMRKYHRIVDD 18
           D + A  NT + T           FCTNG+RK  R++DD
Sbjct: 36  DGSLAVSNTSSNT-----------FCTNGIRKIVRVLDD 63
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,030,143
Number of Sequences: 369166
Number of extensions: 535029
Number of successful extensions: 1174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)