Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D18
(322 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12116|TMS1_YEAST Membrane protein TMS1 29 2.9
sp|O59751|KLP6_SCHPO Kinesin-like protein 6 28 5.0
>sp|Q12116|TMS1_YEAST Membrane protein TMS1
Length = 473
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 224 GYYVFHRYHYLL*CATTVTSLVFIIDRSTEDSTCATKNTGACTIFDLLLLAVV 66
G++ HR ++ L C + +LV +ST D A +N+ F L L +V
Sbjct: 81 GFFTVHRLNFALGCLHLILALVLTGVKSTNDVRAALQNSWWSLKFILYLCLIV 133
>sp|O59751|KLP6_SCHPO Kinesin-like protein 6
Length = 784
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 134 DSTCATKNTGACTIFDLLLLAVVRFCTNGMRKYHRIVDD 18
D + A NT + T FCTNG+RK R++DD
Sbjct: 36 DGSLAVSNTSSNT-----------FCTNGIRKIVRVLDD 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,030,143
Number of Sequences: 369166
Number of extensions: 535029
Number of successful extensions: 1174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)