Planaria EST Database


DrC_02560

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02560
         (510 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    37   0.035
sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    34   0.17 
sp|Q88435|NCAP_SV5  Nucleoprotein (N protein) (Nucleocapsid ...    31   1.9  
sp|P77406|PERM_ECOLI  Putative permease perM                       31   1.9  
sp|P47384|LEPA_MYCGE  GTP-binding protein lepA                     30   4.3  
sp|P08131|KRB2D_SHEEP  Keratin, high-sulfur matrix protein, B2D    30   4.3  
sp|O35912|EMP3_MOUSE  Epithelial membrane protein 3 (EMP-3) ...    29   5.6  
sp|P07207|NOTCH_DROME  Neurogenic locus Notch protein precursor    29   7.3  
sp|Q26627|SUREJ_STRPU  Sperm receptor for egg jelly precurso...    29   7.3  
sp|P54852|EMP3_HUMAN  Epithelial membrane protein 3 (EMP-3) ...    28   9.6  
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 36.6 bits (83), Expect = 0.035
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = -1

Query: 462 AQWRYKLYGCFEDKETCILSILS-PCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVR 286
           + W+  +  CF D   C+      PC      A+       LCG S+           +R
Sbjct: 24  SNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC--LCGTSVA----------MR 71

Query: 285 KKVRERRNIEGTCWDDFQVFLCFCCCGLTQMKREID 178
              R R  I G+  DD+   LC   C L Q+KR+I+
Sbjct: 72  TLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = -1

Query: 462 AQWRYKLYGCFEDKETCILSILSPCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVRK 283
           + W+  L  CF D   C+        +  ++A  +     LCG ++           +R 
Sbjct: 21  SNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-CLCGTTVA----------MRT 69

Query: 282 KVRERRNIEGTCWDDFQVFLCFCCCGLTQMKREID 178
             R R  I G+  DD+ V L    C + Q+KR+I+
Sbjct: 70  LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q88435|NCAP_SV5 Nucleoprotein (N protein) (Nucleocapsid protein) (NP protein)
          Length = 509

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 261 IEGTCWDDFQVFLCFCCCGLTQMKREIDYAKRCKCMS 151
           +EGT WD+ + FL  C   L Q      +   CKCM+
Sbjct: 152 VEGTAWDEIETFLDMCYSVLMQA-----WIVTCKCMT 183
>sp|P77406|PERM_ECOLI Putative permease perM
          Length = 353

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 LTFFLTKG*EQQINGVQILIPHNNGLIG 358
           + FFL K  EQ +N V+ ++P N GL G
Sbjct: 172 MVFFLLKDKEQMLNAVRRVLPRNRGLAG 199
>sp|P47384|LEPA_MYCGE GTP-binding protein lepA
          Length = 598

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 94  TIKLFLISFSINSRRRNYL*HTFASFCVVDFSFHLG*STTAKTKKYLKIIPTSAFDISSL 273
           TIKL  +   IN    NYL H   +   VDF++ +  S  A     L +  T      ++
Sbjct: 55  TIKLNAVELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTI 114

Query: 274 SN 279
           SN
Sbjct: 115 SN 116
>sp|P08131|KRB2D_SHEEP Keratin, high-sulfur matrix protein, B2D
          Length = 182

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -1

Query: 414 CILSILSPCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVRKKVRERRNIEGTC 247
           C++S  SP       A+     P  CG S C P  CC  P   + V E    E TC
Sbjct: 128 CVVSCTSPSCCQLYYAQASCCRPSYCGQSCCRP-ACCCQPTCIEPVCEPTCCEPTC 182
>sp|O35912|EMP3_MOUSE Epithelial membrane protein 3 (EMP-3) (YMP protein) (Hematopoietic
           neural membrane protein) (HNMP-1)
          Length = 163

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 102 IVLNFILYQL*KTELF-VTYICIVLRSRFLFSFGLIHNSKNKEILENHPN-KCLRYFFAL 275
           I+  F LY + +  LF  T +C +  S  +FS  LI+    +EIL  HP+     Y FAL
Sbjct: 82  ILFMFQLYTMRRGGLFYATGLCQLCTSAAVFSGALIYAIHTEEILAKHPSGGSFGYCFAL 141
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein precursor
          Length = 2703

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 258 EGTCWDDFQVFLCFCCCGLTQMKREID 178
           EG+C DD   F C C  G T  + EID
Sbjct: 500 EGSCLDDPGTFRCVCMPGFTGTQCEID 526
>sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly precursor (suREJ)
          Length = 1450

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 255 GTCWDDFQVFLCFCCCGLTQMKREIDY 175
           GTC D F  F CFC  G T    E +Y
Sbjct: 40  GTCADGFNNFTCFCEEGFTGSMCETEY 66
>sp|P54852|EMP3_HUMAN Epithelial membrane protein 3 (EMP-3) (YMP protein) (Hematopoietic
           neural membrane protein) (HNMP-1)
          Length = 163

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 102 IVLNFILYQL*KTELF-VTYICIVLRSRFLFSFGLIHNSKNKEILENHP-NKCLRYFFAL 275
           I+  F LY + +  LF  T +C +  S  +F+  LI+    +EILE HP      Y FAL
Sbjct: 82  ILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILEKHPRGGSFGYCFAL 141
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,840,129
Number of Sequences: 369166
Number of extensions: 1160003
Number of successful extensions: 2566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2561
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)