Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C13
(510 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 37 0.035
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 34 0.17
sp|Q88435|NCAP_SV5 Nucleoprotein (N protein) (Nucleocapsid ... 31 1.9
sp|P77406|PERM_ECOLI Putative permease perM 31 1.9
sp|P47384|LEPA_MYCGE GTP-binding protein lepA 30 4.3
sp|P08131|KRB2D_SHEEP Keratin, high-sulfur matrix protein, B2D 30 4.3
sp|O35912|EMP3_MOUSE Epithelial membrane protein 3 (EMP-3) ... 29 5.6
sp|P07207|NOTCH_DROME Neurogenic locus Notch protein precursor 29 7.3
sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly precurso... 29 7.3
sp|P54852|EMP3_HUMAN Epithelial membrane protein 3 (EMP-3) ... 28 9.6
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 36.6 bits (83), Expect = 0.035
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -1
Query: 462 AQWRYKLYGCFEDKETCILSILS-PCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVR 286
+ W+ + CF D C+ PC A+ LCG S+ +R
Sbjct: 24 SNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC--LCGTSVA----------MR 71
Query: 285 KKVRERRNIEGTCWDDFQVFLCFCCCGLTQMKREID 178
R R I G+ DD+ LC C L Q+KR+I+
Sbjct: 72 TLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 34.3 bits (77), Expect = 0.17
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = -1
Query: 462 AQWRYKLYGCFEDKETCILSILSPCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVRK 283
+ W+ L CF D C+ + ++A + LCG ++ +R
Sbjct: 21 SNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-CLCGTTVA----------MRT 69
Query: 282 KVRERRNIEGTCWDDFQVFLCFCCCGLTQMKREID 178
R R I G+ DD+ V L C + Q+KR+I+
Sbjct: 70 LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q88435|NCAP_SV5 Nucleoprotein (N protein) (Nucleocapsid protein) (NP protein)
Length = 509
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 261 IEGTCWDDFQVFLCFCCCGLTQMKREIDYAKRCKCMS 151
+EGT WD+ + FL C L Q + CKCM+
Sbjct: 152 VEGTAWDEIETFLDMCYSVLMQA-----WIVTCKCMT 183
>sp|P77406|PERM_ECOLI Putative permease perM
Length = 353
Score = 30.8 bits (68), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 275 LTFFLTKG*EQQINGVQILIPHNNGLIG 358
+ FFL K EQ +N V+ ++P N GL G
Sbjct: 172 MVFFLLKDKEQMLNAVRRVLPRNRGLAG 199
>sp|P47384|LEPA_MYCGE GTP-binding protein lepA
Length = 598
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 94 TIKLFLISFSINSRRRNYL*HTFASFCVVDFSFHLG*STTAKTKKYLKIIPTSAFDISSL 273
TIKL + IN NYL H + VDF++ + S A L + T ++
Sbjct: 55 TIKLNAVELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTI 114
Query: 274 SN 279
SN
Sbjct: 115 SN 116
>sp|P08131|KRB2D_SHEEP Keratin, high-sulfur matrix protein, B2D
Length = 182
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -1
Query: 414 CILSILSPCYVFGKIAEQIPMSPLLCGISICTPFICCSYPLVRKKVRERRNIEGTC 247
C++S SP A+ P CG S C P CC P + V E E TC
Sbjct: 128 CVVSCTSPSCCQLYYAQASCCRPSYCGQSCCRP-ACCCQPTCIEPVCEPTCCEPTC 182
>sp|O35912|EMP3_MOUSE Epithelial membrane protein 3 (EMP-3) (YMP protein) (Hematopoietic
neural membrane protein) (HNMP-1)
Length = 163
Score = 29.3 bits (64), Expect = 5.6
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 102 IVLNFILYQL*KTELF-VTYICIVLRSRFLFSFGLIHNSKNKEILENHPN-KCLRYFFAL 275
I+ F LY + + LF T +C + S +FS LI+ +EIL HP+ Y FAL
Sbjct: 82 ILFMFQLYTMRRGGLFYATGLCQLCTSAAVFSGALIYAIHTEEILAKHPSGGSFGYCFAL 141
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein precursor
Length = 2703
Score = 28.9 bits (63), Expect = 7.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 258 EGTCWDDFQVFLCFCCCGLTQMKREID 178
EG+C DD F C C G T + EID
Sbjct: 500 EGSCLDDPGTFRCVCMPGFTGTQCEID 526
>sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly precursor (suREJ)
Length = 1450
Score = 28.9 bits (63), Expect = 7.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 255 GTCWDDFQVFLCFCCCGLTQMKREIDY 175
GTC D F F CFC G T E +Y
Sbjct: 40 GTCADGFNNFTCFCEEGFTGSMCETEY 66
>sp|P54852|EMP3_HUMAN Epithelial membrane protein 3 (EMP-3) (YMP protein) (Hematopoietic
neural membrane protein) (HNMP-1)
Length = 163
Score = 28.5 bits (62), Expect = 9.6
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 102 IVLNFILYQL*KTELF-VTYICIVLRSRFLFSFGLIHNSKNKEILENHP-NKCLRYFFAL 275
I+ F LY + + LF T +C + S +F+ LI+ +EILE HP Y FAL
Sbjct: 82 ILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILEKHPRGGSFGYCFAL 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,840,129
Number of Sequences: 369166
Number of extensions: 1160003
Number of successful extensions: 2566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2561
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)