Planaria EST Database


DrC_02559

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02559
         (804 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LYT3|TT12_ARATH  TRANSPARENT TESTA 12 protein                 60   7e-09
sp|Q10085|YAO6_SCHPO  Hypothetical protein C11D3.06 in chrom...    48   4e-05
sp|Q8G2I1|NORM_BRUSU  Probable multidrug resistance protein ...    46   1e-04
sp|Q8CUL5|NORM_OCEIH  Probable multidrug resistance protein ...    45   2e-04
sp|Q6NB79|NORM_RHOPA  Probable multidrug resistance protein ...    45   3e-04
sp|Q7WJR0|NORM_BORBR  Probable multidrug resistance protein ...    43   0.001
sp|Q7WAK9|NORM_BORPA  Probable multidrug resistance protein ...    43   0.001
sp|Q9KEJ2|NORM_BACHD  Probable multidrug resistance protein ...    43   0.001
sp|Q89W72|NORM_BRAJA  Probable multidrug resistance protein ...    43   0.001
sp|Q6LQ49|NORM_PHOPR  Multidrug resistance protein norM (Na(...    42   0.003
>sp|Q9LYT3|TT12_ARATH TRANSPARENT TESTA 12 protein
          Length = 507

 Score = 60.1 bits (144), Expect = 7e-09
 Identities = 39/118 (33%), Positives = 59/118 (50%)
 Frame = +3

Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
           E+KL   +    I+ +V  Y L+  T  F G L S +L G ++A   I  LA+ I  GM 
Sbjct: 51  ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMA 110

Query: 615 SACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQNHVIS 788
           SA  T+  Q++G+      G+  QR ++L     VFL  L+    PI+   GQ+  I+
Sbjct: 111 SAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168
>sp|Q10085|YAO6_SCHPO Hypothetical protein C11D3.06 in chromosome I
          Length = 455

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 32/115 (27%), Positives = 54/115 (46%)
 Frame = +3

Query: 429 LDETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSG 608
           L E K  L    PVI+    Q +L   +    GRL  +EL   A A     +  W I  G
Sbjct: 5   LTEVKYLLINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGWLIALG 64

Query: 609 MVSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
             +A DT+ +  +G+  K+  G+ LQ G ++ +++ + +  +    +PI+I   Q
Sbjct: 65  GTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQ 119
>sp|Q8G2I1|NORM_BRUSU Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
 sp|Q8YFD7|NORM_BRUME Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 471

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
 Frame = +3

Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
           E  + LK+G+P+I TN+ Q ALT     F GRL +  L    LA S    L      G+V
Sbjct: 23  EMVVALKLGWPLIFTNLSQAALTATDVIFIGRLGADTLASALLATSFYHTL-MIFSMGLV 81

Query: 615 SACDTMFAQSFG----SINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
           SA   M A + G    S+   R    +++G     ++ + LW +  + E I +  GQ
Sbjct: 82  SAVMPMIAIALGKNRHSVRDVRR--TVRQGFWSAIMIVIPLWVVLWHCEEIFLFLGQ 136
>sp|Q8CUL5|NORM_OCEIH Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 447

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
 Frame = +3

Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
           D+ KL + I  P++IT V    ++   T   G+ ++ +L GVA+  SL   +   I +G+
Sbjct: 9   DKIKLFIIILLPILITQVSINLMSFFDTMMSGQFSARDLAGVAIGSSLWVPILTGI-NGI 67

Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL-HINLEPIMILCGQNHVIS 788
           V +   + A   G+ NKK     +Q+G+ L+ ++ + +  +  I L+PI+        + 
Sbjct: 68  VLSITPIIAHLIGAKNKKDIPQVIQQGIYLSFVLSIIIIVIGGIALDPILQAMSLEKEVQ 127

Query: 789 RIA 797
           RIA
Sbjct: 128 RIA 130
>sp|Q6NB79|NORM_RHOPA Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 474

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 33/118 (27%), Positives = 59/118 (50%)
 Frame = +3

Query: 450 LKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMVSACDT 629
           L + +P+ +T + Q A+     A  GRL    +   ALA  ++ +  + +  G+VSA   
Sbjct: 33  LWLAWPMALTQLGQIAMMTTDLALIGRLGDAAVAAAALAHFVLFS-TFTMGLGLVSAVTP 91

Query: 630 MFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQNHVISRIAGE 803
           + AQ+FG+   ++    L+ GL    +  V L    +  E +++  GQN   SR+AG+
Sbjct: 92  LAAQAFGARAPRQVRASLRVGLWAGVIAGVPLTLGQLYGEELLVALGQNPATSRLAGD 149
>sp|Q7WJR0|NORM_BORBR Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 460

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +3

Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
           E    L +G P+++TN+ Q A+T+    F GRL S  L   AL  +L  A+ +    G+V
Sbjct: 13  ELAATLALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEF-FGLGLV 71

Query: 615 SACDTMFAQSFG 650
           +A   M A + G
Sbjct: 72  AATAPMVAHALG 83
>sp|Q7WAK9|NORM_BORPA Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 460

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +3

Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
           E    L +G P+++TN+ Q A+T+    F GRL S  L   AL  +L  A+ +    G+V
Sbjct: 13  ELAATLALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEF-FGLGLV 71

Query: 615 SACDTMFAQSFG 650
           +A   M A + G
Sbjct: 72  AATAPMVAHALG 83
>sp|Q9KEJ2|NORM_BACHD Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 458

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
 Frame = +3

Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
           ++ KL L +  P++IT +  YA+    T   G+  + +L GVA+  SL     +   +G+
Sbjct: 9   EKGKLFLVVMMPILITQIGLYAMNFFDTVMSGQAGANDLAGVAIGSSL-WVPVFTGLNGV 67

Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL-HINLEPIMILCGQNHVIS 788
           + A   + AQS G+  +        +GL L+  + + +  +  + L+PI+        + 
Sbjct: 68  LLALTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVG 127

Query: 789 RIAGE 803
           RIA E
Sbjct: 128 RIAKE 132
>sp|Q89W72|NORM_BRAJA Probable multidrug resistance protein norM (Multidrug-efflux
           transporter)
          Length = 466

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/114 (27%), Positives = 59/114 (51%)
 Frame = +3

Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
           DE    L++  P+++T + Q A+     A  GRL    +   ALA + +  +++    G+
Sbjct: 24  DEFVETLRLAVPMMLTQLGQIAMITTDLALIGRLGEDAVAAAALAHT-VYFVSFTFGLGL 82

Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
           ++A   + AQ+FG+ + +R    L+ GL +  L+ + + A  +  E I+I  GQ
Sbjct: 83  MAAVSPLVAQAFGAGDVRRIRRALRVGLWVALLISLPMMASPLYGEHILIALGQ 136
>sp|Q6LQ49|NORM_PHOPR Multidrug resistance protein norM (Na(+)/drug antiporter)
           (Multidrug-efflux transporter)
          Length = 456

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
 Frame = +3

Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSL-IGALAWCICSGM 611
           ET+  L +  PV+I +V Q ++    T   G +++T++  V++A S+ + A+ + +  G+
Sbjct: 7   ETRQLLTLAIPVLIASVAQTSMGFVDTVMAGGVSATDMAAVSVASSIWLPAILFGV--GL 64

Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL---------HINLEPIM 758
           + A   + AQ  GS  K +    +Q G LL  ++ V + A+         ++++EPI+
Sbjct: 65  LIALVPIVAQLNGSGKKDKIPFEVQHGFLLALIISVPIMAILYNAGMLIDYMDVEPIL 122
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,542,870
Number of Sequences: 369166
Number of extensions: 1542799
Number of successful extensions: 3179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)