Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B24
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LYT3|TT12_ARATH TRANSPARENT TESTA 12 protein 60 7e-09
sp|Q10085|YAO6_SCHPO Hypothetical protein C11D3.06 in chrom... 48 4e-05
sp|Q8G2I1|NORM_BRUSU Probable multidrug resistance protein ... 46 1e-04
sp|Q8CUL5|NORM_OCEIH Probable multidrug resistance protein ... 45 2e-04
sp|Q6NB79|NORM_RHOPA Probable multidrug resistance protein ... 45 3e-04
sp|Q7WJR0|NORM_BORBR Probable multidrug resistance protein ... 43 0.001
sp|Q7WAK9|NORM_BORPA Probable multidrug resistance protein ... 43 0.001
sp|Q9KEJ2|NORM_BACHD Probable multidrug resistance protein ... 43 0.001
sp|Q89W72|NORM_BRAJA Probable multidrug resistance protein ... 43 0.001
sp|Q6LQ49|NORM_PHOPR Multidrug resistance protein norM (Na(... 42 0.003
>sp|Q9LYT3|TT12_ARATH TRANSPARENT TESTA 12 protein
Length = 507
Score = 60.1 bits (144), Expect = 7e-09
Identities = 39/118 (33%), Positives = 59/118 (50%)
Frame = +3
Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
E+KL + I+ +V Y L+ T F G L S +L G ++A I LA+ I GM
Sbjct: 51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMA 110
Query: 615 SACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQNHVIS 788
SA T+ Q++G+ G+ QR ++L VFL L+ PI+ GQ+ I+
Sbjct: 111 SAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168
>sp|Q10085|YAO6_SCHPO Hypothetical protein C11D3.06 in chromosome I
Length = 455
Score = 47.8 bits (112), Expect = 4e-05
Identities = 32/115 (27%), Positives = 54/115 (46%)
Frame = +3
Query: 429 LDETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSG 608
L E K L PVI+ Q +L + GRL +EL A A + W I G
Sbjct: 5 LTEVKYLLINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGWLIALG 64
Query: 609 MVSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
+A DT+ + +G+ K+ G+ LQ G ++ +++ + + + +PI+I Q
Sbjct: 65 GTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQ 119
>sp|Q8G2I1|NORM_BRUSU Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
sp|Q8YFD7|NORM_BRUME Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 471
Score = 46.2 bits (108), Expect = 1e-04
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +3
Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
E + LK+G+P+I TN+ Q ALT F GRL + L LA S L G+V
Sbjct: 23 EMVVALKLGWPLIFTNLSQAALTATDVIFIGRLGADTLASALLATSFYHTL-MIFSMGLV 81
Query: 615 SACDTMFAQSFG----SINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
SA M A + G S+ R +++G ++ + LW + + E I + GQ
Sbjct: 82 SAVMPMIAIALGKNRHSVRDVRR--TVRQGFWSAIMIVIPLWVVLWHCEEIFLFLGQ 136
>sp|Q8CUL5|NORM_OCEIH Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 447
Score = 45.1 bits (105), Expect = 2e-04
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +3
Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
D+ KL + I P++IT V ++ T G+ ++ +L GVA+ SL + I +G+
Sbjct: 9 DKIKLFIIILLPILITQVSINLMSFFDTMMSGQFSARDLAGVAIGSSLWVPILTGI-NGI 67
Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL-HINLEPIMILCGQNHVIS 788
V + + A G+ NKK +Q+G+ L+ ++ + + + I L+PI+ +
Sbjct: 68 VLSITPIIAHLIGAKNKKDIPQVIQQGIYLSFVLSIIIIVIGGIALDPILQAMSLEKEVQ 127
Query: 789 RIA 797
RIA
Sbjct: 128 RIA 130
>sp|Q6NB79|NORM_RHOPA Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 474
Score = 44.7 bits (104), Expect = 3e-04
Identities = 33/118 (27%), Positives = 59/118 (50%)
Frame = +3
Query: 450 LKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMVSACDT 629
L + +P+ +T + Q A+ A GRL + ALA ++ + + + G+VSA
Sbjct: 33 LWLAWPMALTQLGQIAMMTTDLALIGRLGDAAVAAAALAHFVLFS-TFTMGLGLVSAVTP 91
Query: 630 MFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQNHVISRIAGE 803
+ AQ+FG+ ++ L+ GL + V L + E +++ GQN SR+AG+
Sbjct: 92 LAAQAFGARAPRQVRASLRVGLWAGVIAGVPLTLGQLYGEELLVALGQNPATSRLAGD 149
>sp|Q7WJR0|NORM_BORBR Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 460
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +3
Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
E L +G P+++TN+ Q A+T+ F GRL S L AL +L A+ + G+V
Sbjct: 13 ELAATLALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEF-FGLGLV 71
Query: 615 SACDTMFAQSFG 650
+A M A + G
Sbjct: 72 AATAPMVAHALG 83
>sp|Q7WAK9|NORM_BORPA Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 460
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +3
Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGMV 614
E L +G P+++TN+ Q A+T+ F GRL S L AL +L A+ + G+V
Sbjct: 13 ELAATLALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEF-FGLGLV 71
Query: 615 SACDTMFAQSFG 650
+A M A + G
Sbjct: 72 AATAPMVAHALG 83
>sp|Q9KEJ2|NORM_BACHD Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 458
Score = 42.7 bits (99), Expect = 0.001
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
++ KL L + P++IT + YA+ T G+ + +L GVA+ SL + +G+
Sbjct: 9 EKGKLFLVVMMPILITQIGLYAMNFFDTVMSGQAGANDLAGVAIGSSL-WVPVFTGLNGV 67
Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL-HINLEPIMILCGQNHVIS 788
+ A + AQS G+ + +GL L+ + + + + + L+PI+ +
Sbjct: 68 LLALTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVG 127
Query: 789 RIAGE 803
RIA E
Sbjct: 128 RIAKE 132
>sp|Q89W72|NORM_BRAJA Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 466
Score = 42.7 bits (99), Expect = 0.001
Identities = 31/114 (27%), Positives = 59/114 (51%)
Frame = +3
Query: 432 DETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSLIGALAWCICSGM 611
DE L++ P+++T + Q A+ A GRL + ALA + + +++ G+
Sbjct: 24 DEFVETLRLAVPMMLTQLGQIAMITTDLALIGRLGEDAVAAAALAHT-VYFVSFTFGLGL 82
Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWALHINLEPIMILCGQ 773
++A + AQ+FG+ + +R L+ GL + L+ + + A + E I+I GQ
Sbjct: 83 MAAVSPLVAQAFGAGDVRRIRRALRVGLWVALLISLPMMASPLYGEHILIALGQ 136
>sp|Q6LQ49|NORM_PHOPR Multidrug resistance protein norM (Na(+)/drug antiporter)
(Multidrug-efflux transporter)
Length = 456
Score = 41.6 bits (96), Expect = 0.003
Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Frame = +3
Query: 435 ETKLNLKIGFPVIITNVFQYALTIETTAFCGRLTSTELEGVALAMSL-IGALAWCICSGM 611
ET+ L + PV+I +V Q ++ T G +++T++ V++A S+ + A+ + + G+
Sbjct: 7 ETRQLLTLAIPVLIASVAQTSMGFVDTVMAGGVSATDMAAVSVASSIWLPAILFGV--GL 64
Query: 612 VSACDTMFAQSFGSINKKRTGLFLQRGLLLTNLVPVFLWAL---------HINLEPIM 758
+ A + AQ GS K + +Q G LL ++ V + A+ ++++EPI+
Sbjct: 65 LIALVPIVAQLNGSGKKDKIPFEVQHGFLLALIISVPIMAILYNAGMLIDYMDVEPIL 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,542,870
Number of Sequences: 369166
Number of extensions: 1542799
Number of successful extensions: 3179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)