Planaria EST Database


DrC_02557

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02557
         (679 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05443|LUM_BOVIN  Lumican precursor (Keratan sulfate prot...    31   2.6  
sp|P51885|LUM_MOUSE  Lumican precursor (Keratan sulfate prot...    31   3.4  
sp|P51884|LUM_HUMAN  Lumican precursor (Keratan sulfate prot...    30   5.8  
sp|P51886|LUM_RAT  Lumican precursor (Keratan sulfate proteo...    29   9.9  
sp|O34204|TOP1_FERIS  DNA topoisomerase I (Omega-protein) (R...    29   9.9  
>sp|Q05443|LUM_BOVIN Lumican precursor (Keratan sulfate proteoglycan) (KSPG) (Corneal
           keratan sulfate proteoglycan 37B core protein)
          Length = 342

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 643 EIQKFDISNVCFNLGNIKYKHVKHLN*KPTH 551
           E++KFD+ + C  LG + Y  +KHL     H
Sbjct: 289 ELEKFDVKSFCKILGPLSYSKIKHLRLDGNH 319
>sp|P51885|LUM_MOUSE Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
           lumican)
          Length = 338

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
           E++KFD+ + C  LG + Y  +KHL
Sbjct: 285 ELEKFDVKSFCKILGPLSYSKIKHL 309
>sp|P51884|LUM_HUMAN Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
           lumican)
          Length = 338

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
           +++KFDI + C  LG + Y  +KHL
Sbjct: 285 QLEKFDIKSFCKILGPLSYSKIKHL 309
>sp|P51886|LUM_RAT Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
           lumican)
          Length = 338

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
           +++KFD+ + C  LG + Y  +KHL
Sbjct: 285 KLEKFDVKSFCKILGPLSYSKIKHL 309
>sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 699

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 YHLRIVDMGVQLHCPNCK 230
           Y L++   G+ LHCPNCK
Sbjct: 608 YKLKVGKYGLYLHCPNCK 625
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,410,776
Number of Sequences: 369166
Number of extensions: 1595346
Number of successful extensions: 3119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)